Program blastn tblastn tblastx Database Williams 82 genomic sequence Combined G. max and G. soja ESTs Combined G. max and G. soja NA sequences G. max Genomic Sequences except phase 0,1 and 2 HTG G. max EST Sequences G. max GSS Sequences All G. max NA sequences except phase 0,1 and 2 HTG G. soja Genomic sequences G. soja EST sequences G. soja GSS Sequences All G. soja NA sequences

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Expect 1e-100 1e-50 1e-20 1e-15 1e-10 1e-6 1e-4 1e-2 1
  Note: other Expect values can be entered in the Other advanced options window
Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment

Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)

Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)

Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF

Other advanced options:     
NOTE: other Expect values can be entered here. For example    -e 1e-17