SoyBase soybean browser: genomic sequence, markers, physical map, ...

View the JGI Gma1.01 WGS soybean genomic sequence, as pseudomolecules, integrating features from the soybean composite genetic and physical maps with the genomic sequence. Links from GBrowse features (BACs, markers) to locations in the SoyBase genetic and physical maps are available from a contextual menu. The preliminary 7x assembly is still available here.

View or download a list of markers or other sequence map features by chromosomes here.

Download gene call sequences from the Williams 82 genomic sequence.

BARCSOYSSR 1.0, a collection of 33,065 potential SSRs identified by Qijian Song and Perry Cregan from the Wm82 genomic sequence has been released. These SSRs are now available as a track in the SoyBase Genome Browser. The whole dataset is available for download from the link below.

BARC Soybean Potential SSR Data

SSR and RFLP marker sequences are available for download from the links below.

Classic Soybean RFLP sequences

Classic Soybean SSR sequences

Classic Soybean SSR primer sequences

JGI Phytozome soybean portal: sequence downloads, methods ...

Obtain information on how the soybean genomic sequence was assembled here. Search the assembly for sequences with BLAST. Download the sequence and annotations as text files.

JGI soybean browser: genomic sequence annotated by JGI, homologs, ...

View the JGI Gma1.01 WGS soybean genomic sequence pseudomolecules annotated with JGI gene models, Arabidopsis peptides, soybean and other legume ESTs. This uses the GBrowse browser.

PlantGDB soybean browser: gene models, EST and gene alignments, Affy probes, ...

View the JGI 7x WGS genomic sequence annotated with with JGI gene models, PUTs (PlantGDB-assembled Unique Transcripts), ESTs and Legume and Arabidopsis protein sequences.