In this form you can BLAST your sequences to individual cultivar transcript or gene sequences in the SoyBase Soybean Cultivar Genomes Collection or perform a Pan-genome analysis by comparing your input sequence to all the protein or nucleic acid sequences of all of those contained in the SoyBase Soybean Cultivar Genomes Collection. You can also download individual cultivar's genomic or gene model sequences
From this form you can download soybean cultivar genomic, gene model and protein sequences from the SoyBase soybean cultivar genomes collection. The results will be made into a file and transfered to your computer to save.
Bayer et al. sequenced 1000 accessions from the USDA Soybean Germplasm Collection and assembled the genomes using the cultivar Lee. The collection included wild and cultivated strains to assess genome-wide gene changes due to domestication.
SoyBase Genome Viewer representation of Lee gene presence/absence in 1000 accessions
Files associated with this project