%YAML 1.2
identifier: WKJG

provenance: The files in this directory are considered the primary repository. See associated publication and files below.

source: https://soybase.org/data/public/Glycine/max/Wm82.gnm1.div.WKJG

subject: Variant information for 96 wild soybean accession (Glycine soja Sieb. and Zucc.) genotyped using the NJAU 335K SoySNP array, provided by Guizhen Kan. This directory contains the original text file containing 114K SNPs.   

related_to: Glycine max Soybean Reference Genome Wm82.gnm1.FCtY / Wm82.a1

scientific_name: 
  - Glycine soja

taxid: 
  - 3848

bioproject: none

scientific_name_abbrev: 
  - glyso

genotype: Multiple wild accessions genotyped with the NJAU 335K SoyaSNP array. SNP array was constructed with with respect to Wm82.a1.

description: Genotype information for 96 wild soybean accessions. 

dataset_doi: none

genbank_accession: none

original_file_creation_date: 2020-11-02

local_file_creation_date: 2020-11-02

publication_doi: DOI:10.1007/s00425-019-03329-6

dataset_release_date: 2021-04-19

publication_title: Genetic dissection of yield-related traits via genome-wide association analysis across multiple environments in wild soybean (Glycine soja Sieb. and Zucc.)

contributors: Guizhen Kan

data_curators: Anne V. Brown

public_access_level: public

license: open

keywords: soybean, diversity, SNP, soja

citations: none

file_transformation: 
  - convert HapMap file into VCF file using Tassel.  ./run_pipeline.pl -Xmx16g -h /home/96w_used_tassel.hmp.txt -export /home/96w_used.vcf -exportType VCF
  - added "Gm" to the beginning of each chromosome. perl -pe 's/^(\d\d)/Gm$1/; s/^(\d){1}/Gm0$1/' 96w_used.vcf

changes: