---
identifier: Wm82.gnm2.div.Torkamaneh_Laroche_2017

provenance: "Data in this directory derives from the publication 10.1111/pbi.12825. files in this present directory are derived, and may have changes, as noted below.  The files here are held as part of the LegumeInfo, PeanutBase, and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo, PeanutBase, and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory."

synopsis: "Resequencing information for 102 Canadian soybean accessions."

scientific_name: Glycine max

taxid: 3847

bioproject: PRJNA356132

scientific_name_abbrev: glyma

genotype:
  - 102 Canadian soybean accessions

description: "Original VCF file received from Dr. Davoud Torkamaneh containing 4900192 variants (Single Nucleotide Polymorphisms and Structural Variants) in 102 Canadian soybean accessions."

genbank_accession: SRP094720 

original_file_creation_date: "2017-10-02"

local_file_creation_date: "2017-10-02"

publication_doi: 10.1111/pbi.12825

dataset_release_date: "2018-06-14"

publication_title: "Comprehensive description of genomewide nucleotide and structural variation in short-season soya bean"

contributors: "Davoud Torkamaneh, Jerome Laroche, Aurelie Tardivel, Louise O'Donoughue, Elroy Cober, Istvan Rajcan, Francois Belzile"

data_curators: Anne V. Brown

public_access_level: Public

license: Open

keywords: bioinformatics pipeline, genotype accuracy, heterozygosity, next-generation sequencing, sequence variants, SVs

citation: "Torkamaneh, D., Laroche, J., Tardivel, A., O'Donoughue, L., Cober, E., Rajcan, I., & Belzile, F. (2017). Comprehensive description of genomewide nucleotide and structural variation in short-season soya bean. Plant Biotechnology Journal."