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# filename in this repository: description
glyma.Wm82.gnm2.div.Torkamaneh_Laroche_2019.NonSynSNPs.vcf.gz      Original VCF file filtered to only Non-Synonymous SNPs based off the program SnpEff (SNPs indicated as having a HIGH or MODERATE effect). This File contains 315,993 SNP: positions. 
glyma.Wm82.gnm2.div.Torkamaneh_Laroche_2019.AccessionTable.txt.gz     Table containing accession codes and information for the 1007 soybean accessions in the VCF: file.
glyma.Wm82.gnm2.div.Torkamaneh_Laroche_2019.script.py.gz              Script used to convert GmHapMap_GT text file to vcf: file. 
glyma.Wm82.gnm2.div.Torkamaneh_Laroche_2019.genotypes_by_gene.hmp.gz    Genotypes found in all genes, in hapmap format, with addition of gene name in first column. Derived using: HaplotypeMiner
glyma.Wm82.gnm2.div.Torkamaneh_Laroche_2019.haplotypes_by_gene.tsv.gz   List of haplotype patterns found in all genes. Custom format. Derived using: HaplotypeMiner
glyma.Wm82.gnm2.div.Torkamaneh_Laroche_2019.loss_of_function.xlsx.gz    Spreadsheet of loss-of-function genotypes for all genes. Derived using: HaplotypeMiner