---
identifier: mixed.tcp1.vRdj

provenance: "The original repository was http://medsa.comparative-legumes.org/, which has been replaced by this repository at http://data.legumeinfo.org/Medicago_sativa/"

source: "http://data.legumeinfo.org/Medicago_sativa/"

synopsis: transcriptome assembly

scientific_name: Medicago sativa

taxid: 3879

scientific_name_abbrev: medsa

genotype:
  - consensus of 27 accessions

description: "The transcriptomes of 27 alfalfa genotypes, including elite breeding genotypes, parents of mapping populations, and unimproved wild genotypes, were sequenced using an Illumina Genome Analyzer IIx. De novo assembly of quality-filtered 72-bp reads generated 25,183 contigs with a total length of 26.8 Mbp and an average length of 1,065 bp, with an average read depth of 55.9-fold for each genotype. (Li, Acharya et al., 2012; DOI: 10.1186/1471-2164-13-568)"

original_file_creation_date: "2012-02-01"

local_file_creation_date: "2016-12-01"

publication_doi: 10.1186/1471-2164-13-568

dataset_release_date: "2016-12-01"

publication_title: "Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing"

data_curators: Jacqueline Campbell, Steven Cannon

public_access_level: public

license: open

keywords: alfalfa, Medicago sativa, transcriptome assembly

citation: "Li, X., Acharya, A., Farmer, A. D., Crow, J. A., Bharti, A. K., Kramer, R. S., Wei, Y., Han, Y., Gou, J., May, G. D., Monteros, M. J., Brummer, E. C. (2012) Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing. BMC Genomics 201213:568."