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Integrating Genetics and Genomics to Advance Soybean Research



SoyBase Expression Explorer
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model,
and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
Glyma.08g101900 not represented in the dataset
Danzer et al. 2015, Plant Phys 168(3):1025-10352.
> Down-Regulating the Expression of 53 Soybean Transcription Factor Genes Uncovers a Role for SPEECHLESS in Initiating Stomatal Cell Lineages During Embryo Development

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All values in RPMK or FPMK

GSE59076

Fiskeby III 25 ppb ozone 5 hr exposureFiskeby III 25 ppb ozone 5:40 hr exposureFiskeby III 25 ppb ozone 6:20 hr exposureFiskeby III 25 ppb ozone 7:00 hr exposureFiskeby III 75 ppb ozone 5 hr exposureFiskeby III 75 ppb ozone 5:40 hr exposureFiskeby III 75 ppb ozone 6:20 hr exposureFiskeby III 75 ppb ozone 7:00 hr exposureMandarin-Ottawa 25 ppb ozone 5 hr exposureMandarin-Ottawa 25 ppb ozone 5:40 hr exposureMandarin-Ottawa 25 ppb ozone 6:20 hr exposureMandarin-Ottawa 25 ppb ozone 7:00 hr exposureMandarin-Ottawa 75 ppb ozone 5 hr exposureMandarin-Ottawa 75 ppb ozone 5:40 hr exposureMandarin-Ottawa 75 ppb ozone 6:20 hr exposureMandarin-Ottawa 75 ppb ozone 7:00 hr exposure
0.0100000000.0100.0200000
Graph this experiment

GSE89126

Clark 18a k1 black saddle Clark 18a k1 yellow saddle Clark 8 K1 black saddle Clark 8 K1 yellow sectors
0, 00, 00.01, 0.01, 00.01, 0.01, 0
Graph this experiment All values in intensity units
Glyma.08g101900 is not represented on the SoyChip

Download query results HERE

Most RNAseq experiments utilized Wm82.a1 gene models whereas all of the Affymetrix SoyChip experiments were mapped to Wm82.a1 gene models. This means that if your query utilized a Wm82.a2 gene model name you probably will receive little to no results. If you did use a Wm82.a2 gene model name (Glyma.01g010000 for example), you will need to convert your Wm82.a2 gene model name to it's Wm82.a1 corresponding name using the SoyBase gene model correspondence tool. Once you have converted your gene model name you can re-run the Expression Explorer page and paste in the Wm82.a1 corresponding gene model ID into the input box on that page.

To convert your gene model ID click the SUBMIT button below






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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