SoyBase contains considerable information about the Wm82 gene models. While much of this is available from the individual text report pages, it is often the case where collecting such information using a one-by-one approach is not optimal, for example when a list of genes identified in an expression study needs to be compared. To address this we have developed a number of tools that accept a list of gene model names (i.e. Glyma.09g044600) and return analyses based on the entire list.

The underlying algorithms for this report come from Morales et al. (2013)

Working with Glyma 1.0 Gene Models?
The GO Enrichment tool only accepts Wm82.a4 (i.e. Wm82.a4.v1) gene model names. Wm82.a1 or Wm82.a2 names can be converted to their Wm82.a4 equivalents here.

Downloads

The List of Submitted Genes	The Sequences of the Submitted Genes in FASTA Format
A Table of the Submitted Genes and Their Annotations	A GFF File For The Submitted Genes
Loading...GO Enrichment Data

GO Ontologies DistributionThe charts below exclude genes that do not have GO Annotation.
Click on [Full Report] below to view graphics depicting results of the entire list as submitted.

Whole Genome View
(Preview: Some Portions of Scaffolds are Hidden. Click [View Full Report] for more details)

Text Report

GO Enrichment Data

NOTE: In some cases the Corrected P-Value is greater than 1. This can happen when the Bonferroni correction, which multiples the Fisher test p-value by the number of GO terms in the gene list of interest, is applied. Further details can be found in Morales et al. (2013)

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain

SoyBase Gene Model Data Mining and Analysis

Instructions

Downloads

GO Ontologies DistributionThe charts below exclude genes that do not have GO Annotation.
Click on [Full Report] below to view graphics depicting results of the entire list as submitted.

Whole Genome View
(Preview: Some Portions of Scaffolds are Hidden. Click [View Full Report] for more details)

Text Report

GO Enrichment Data

SoyBase Gene Model Data Mining and Analysis

Instructions

Downloads

GO Ontologies DistributionThe charts below exclude genes that do not have GO Annotation.Click on [Full Report] below to view graphics depicting results of the entire list as submitted.

Whole Genome ViewView Full Report(Preview: Some Portions of Scaffolds are Hidden. Click [View Full Report] for more details)

Text Report

GO Enrichment Data

GO Ontologies DistributionThe charts below exclude genes that do not have GO Annotation.
Click on [Full Report] below to view graphics depicting results of the entire list as submitted.

Whole Genome View
(Preview: Some Portions of Scaffolds are Hidden. Click [View Full Report] for more details)