Report for Sequence Feature Glyma14g04350
Feature Type: gene_model
Chromosome: Gm14
Start: 2940438
stop: 2943576
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma14g04350
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12110 AT
Annotation by Michelle Graham. TAIR10: Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | chr5:3914483-3915732 FORWARD LENGTH=228
SoyBase E_val: 2.00E-106 ISS
GO:0006414 GO-bp
Annotation by Michelle Graham. GO Biological Process: translational elongation
SoyBase N/A ISS
GO:0009407 GO-bp
Annotation by Michelle Graham. GO Biological Process: toxin catabolic process
SoyBase N/A ISS
GO:0010583 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone
SoyBase N/A ISS
GO:0005853 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation elongation factor 1 complex
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003746 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity
SoyBase N/A ISS
KOG1668
KOG
Elongation factor 1 beta/delta chain
JGI ISS
PTHR11595 Panther
ELONGATION FACTOR 1-BETA
JGI ISS
PTHR11595:SF5 Panther
ELONGATION FACTOR 1-BETA
JGI ISS
PF00736 PFAM
EF-1 guanine nucleotide exchange domain
JGI ISS
UniRef100_B7FMR1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor 1-beta n=1 Tax=Medicago truncatula RepID=B7FMR1_MEDTR
SoyBase E_val: 5.00E-116 ISS
UniRef100_I1M786 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M786_SOYBN
SoyBase E_val: 4.00E-159 ISS
Expression Patterns of Glyma14g04350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma14g04350
Paralog Evidence Comments
Glyma02g44460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma14g04350 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.14g039100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma14g04350
Coding sequences of Glyma14g04350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma14g04350.1 sequence type=CDS gene model=Glyma14g04350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGTCACCTTCTCAGATCCTCACACCGAAGAGGGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATCTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTGTGGAAAAGCCAGGAGACTCTTTTCCTAATGCTGCTAAGTGGTACGATGCCGTCTCTTCTCAACTTGCTCCAAGCTTCCCTGGGCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTAGTTCCCGTGGGATATGGTATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCAGTGGACACTCTTGTTGAGGAACGCTTGACAGTTGAGCCATGCAACGAGTATATCCAGAGCTGTGACATTGTTGCATTCAACAAAATCTAA
Predicted protein sequences of Glyma14g04350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma14g04350.1 sequence type=predicted peptide gene model=Glyma14g04350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAVTFSDPHTEEGIKSLDQFLSGKTYISGDQLTKDDIKVYAAVVEKPGDSFPNAAKWYDAVSSQLAPSFPGHAQGVRFSGAAAPAEAAPAKAAATAEEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLVEERLTVEPCNEYIQSCDIVAFNKI*