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Report for Sequence Feature Glyma.02g276600

Feature Type:gene_model
Chromosome:Gm02
Start:45955749
stop:45958608
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12110.1AT Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006414GO-bp translational elongation EnsemblGenomesN/AIEA
GO:0006414GO-bp translational elongation JGI N/AIEA
GO:0005853GO-cc eukaryotic translation elongation factor 1 complex EnsemblGenomesN/AIEA
GO:0005853GO-cc eukaryotic translation elongation factor 1 complex JGI N/AIEA
GO:0003746GO-mf translation elongation factor activity EnsemblGenomesN/AIEA
GO:0003746GO-mf translation elongation factor activity JGI N/AIEA
KOG1668 KOG Elongation factor 1 beta/delta chain JGI N/AIEA
PTHR11595Panther ELONGATION FACTOR 1-BETA JGI N/AIEA
PTHR11595:SF5Panther JGI N/AIEA
PF00736PFAM EF-1 guanine nucleotide exchange domain JGI N/AIEA

LocusGene SymbolProtein Name
ELF1B elongation factor 1-beta
ELF1B Elongation Factor 1B

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g276600 not represented in the dataset

Glyma.02g276600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at SoyMine

Gene information in SoyMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.14g039100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma02g44460 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.02g276600.1 sequence-type=CDS polypeptide=Glyma.02g276600.1.p locus=Glyma.02g276600 ID=Glyma.02g276600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTCACCTTCTCAGATCTACACACCGAAGAGGGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAAGCCAGGGGACACTTTTCCTAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGCTTTCCTGGCCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAAGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTTCCTGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCCGTGGACACCCTTGTTGAGGAACGCTTGACAGTTGAGCCATGCAACGAGTATATCCAGAGCTGTGACATTGTTGCATTCAACAAAATTTAA

>Glyma.02g276600.1.p sequence-type=predicted peptide transcript=Glyma.02g276600.1 locus=Glyma.02g276600 ID=Glyma.02g276600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVTFSDLHTEEGIKSLDQFLSGKTYISGDQLTKDDIKVYAAVVEKPGDTFPNAAKWYDAVSSQLAPSFPGHAQGVRFSGAAAPAEAAPAKAAATAEEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLVEERLTVEPCNEYIQSCDIVAFNKI*







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