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Report for Sequence Feature Glyma.08g180600

Feature Type:gene_model
Chromosome:Gm08
Start:14463100
stop:14469119
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g180600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G13810.1AT AGD2-like defense response protein 1 JGI N/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008483GO-mf transaminase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG0257 KOG Kynurenine aminotransferase, glutamine transaminase K JGI N/AIEA
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI N/AIEA
PTHR11751:SF22Panther AMINOTRANSFERASE ALD1-RELATED JGI N/AIEA
PF00155PFAM Aminotransferase class I and II JGI N/AIEA
PWY-5097SoyCyc9 L-lysine biosynthesis VI Plant Metabolic Network ISS
PWY-724SoyCyc9 superpathway of L-lysine, L-threonine and L-methionine biosynthesis II Plant Metabolic Network ISS
GN7V-42272SoyCyc9-rxn LL-diaminopimelate aminotransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g180600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g180600
ParalogEvidenceComments
Glyma.15g051800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g180600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g19250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g180600
>Glyma.08g180600.1 sequence-type=CDS polypeptide=Glyma.08g180600.1.p locus=Glyma.08g180600 ID=Glyma.08g180600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACAACTCATCAATTTGCAGTTTTATGTTTAGTACTAATATTTTGCAGCCTAGGATGGTAATTGCGAGGCTGTCATGCACATTGAAGACTCATCAAAACGTGAGAATCGGACACTGCACAAAGGTGCCCAGGAATGTAAACATGGAGAAACTGCAACATGGTTATTTATTTCCTGAGATTGAAAGACACGAGCTTATGCACTTAGAGATGTATCCACATGCAAATGTAATAGACCTCGGAATTGGTGATACGACACAACCCTTACCAACAATTGTAACATCTAGCATGGTTGATTTTGTGCATGGCCTTTCAACAGCAACAGGCTATAAAGGATATGGACCAGAGCAAGGTGAAAAGGCCTTGAGGAAAGCAATTTCTGTTACATTCTACAAAGATCTGGGGATAAAACCTTCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATATTACTCGTCTTCAGCTGCTTATGGGTCCCAATCTGAAGATAGCTGTGCAGGATCCATCCTTTCCGGCCTACATAGATTCGAGTGTCATAATTGGTCAGGCTGGCAAGTTTGTAGATAAAGCTGGGAAGTACAAAAACATAGAATACATGACATGTGGACCTCAAAGTGACTTCTTTCCTGATCTTCCTACCATTTCAAGGACTGAACTTATTTTCTTCAATTCTCCAAACAATCCCACTGGTCATGCAGCAACAAGGAAGCAATTAGAACAACTTGTGGATTTTGCCAAAGTGAATGGATCAATCATTATCTTTGACTCTGCATATTCAGCATATATCACTGATGATAGTCCTAAATCAATCTACGAAATTCCTGGAGCCAGAGAGGTTGCAATTGAAGTGTCATCCTTCTCGAAATTTGCTGGCTTCACAGGTGTCCGCCTTGGTTGGACAGTGGTCCCTGAAGAACTCTTGTATTCAAATGGCTTTCCTGTTGTGCATGATTTCAACCGTATAATGTGCACATGTTTTAATGGAGCATCCAACATAGCTCAAGCTGGTGGACTAGCATGCCTTTCCCCAGAGGGTTTAAGGGCCATGCAGACCCTTGTTGACTACTATATGGAGAATGCAAGGATACTGGTTGATGCTTTGACTTCTCTTGGTCTGACAGTGTATGGTGGTAAAAATGCACCCTATGTTTGGGTCCATTTTCCTGGCTCAAAATCTTGGAATGTTTTTGCTGAAATTCTTGAGAAGACTCACATAATTACAGTCCCGGGTAGTGGTTTTGGACCAGGTGGTGAAGAATATATAAGAATTAGTGCTTTTGGCCAGAGAGATTCCATCATTGAAGCCTCAAAAAGACTCAAATACCTTATCTATCAGGAGCAAAACTAA
Predicted protein sequences of Glyma.08g180600
>Glyma.08g180600.1.p sequence-type=predicted peptide transcript=Glyma.08g180600.1 locus=Glyma.08g180600 ID=Glyma.08g180600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYNSSICSFMFSTNILQPRMVIARLSCTLKTHQNVRIGHCTKVPRNVNMEKLQHGYLFPEIERHELMHLEMYPHANVIDLGIGDTTQPLPTIVTSSMVDFVHGLSTATGYKGYGPEQGEKALRKAISVTFYKDLGIKPSEVFVSDGAQCDITRLQLLMGPNLKIAVQDPSFPAYIDSSVIIGQAGKFVDKAGKYKNIEYMTCGPQSDFFPDLPTISRTELIFFNSPNNPTGHAATRKQLEQLVDFAKVNGSIIIFDSAYSAYITDDSPKSIYEIPGAREVAIEVSSFSKFAGFTGVRLGWTVVPEELLYSNGFPVVHDFNRIMCTCFNGASNIAQAGGLACLSPEGLRAMQTLVDYYMENARILVDALTSLGLTVYGGKNAPYVWVHFPGSKSWNVFAEILEKTHIITVPGSGFGPGGEEYIRISAFGQRDSIIEASKRLKYLIYQEQN*






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