SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma.08g182900

Feature Type:gene_model
Chromosome:Gm08
Start:14680507
stop:14683313
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25270.1AT nodulin MtN21 /EamA-like transporter family protein JGI N/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity EnsemblGenomesN/AIEA
PF00892PFAM EamA-like transporter family JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.15g049700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma08g19500 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.08g182900.1 sequence-type=CDS polypeptide=Glyma.08g182900.1.p locus=Glyma.08g182900 ID=Glyma.08g182900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGAAATGAAGGGCATATGTAATGTGTTGCATGGGTTGAAACCAGTGTTGCTGATGGTGTTAGTGCAAATTGCATATACTGCTGTCAATGTGCTTTTCAAGCTCGCCATAAACGACGGAATGAGTGTAAAGGTTGCCACAGCATATCGCCTCACTTTTGGATCTGCTTTCACTGTTCCTCTCGCTCTCATTTCTGAAAGGAACAAAAGACCAAAGATGACTTGGAGGGTGCTTTTCATGGCATGTCTTTGTGGCTTATTCGGGGGAAGTTTATTTCAAAACCTTTTCTATGAGTCCTTGGCTTTAACATCAGCAACGTTTGCGTCCGCTCTCTACAACCTCATTCCAGCCATTACCTTTGTCTTGGCCATCTCCTGCGGTTTCGAAAGGTTAAATTTGAGGGTGGCAGCAGGAAGGGCCAAGGTGTTGGGAACTTTACTTGGAATTGGTGGAGCAATGTTGTTGACCTTTATCAAAGGGGCAGAAATTAATATCTGGCCTTTCCACATCAACCTTATGCATCCAGATCAGCACCAAAACAGCCACGTGGCATCATTAAATACTGACTCTGGCAATAATAAGTTGTTGGGAGCAATTTGCTCCCTAGCAAGCTGCTTCTCTTTTGCTTTGTGGCTCACCATTCAGGCTAAGATGAGCAAAGAATACCCATGTCACTACTCAAGCACGGCTCTTATGTCTACAGCGGGAGCAATACAAGCCACTGCTTTTGGTTTCTGTTTTGAGAGGGATTTGACCCAATGGAAGTTGGGTTGGAATATTCGGCTACTGGCTGTGGCTTATTCGGGAATCGTGGCCTCTGGAATAGTTGTAATTATAACTGCGTGGTGCATACAGATGAGAGGGCCTCTGTTTGCGTCTGTTTTCAACCCTCTAATGCTTGTGCTTGTGGCTATTGCCGGTTCTTTGATGTTGAATGAGAACTTATACGTAGGAAGTGTGGTTGGAGCAGTGCTGATTGTGTGTGGGCTGTACATGGTTCTGTGGGGTAAAAGTAAAGAGATGAAAAATATTACTCAGTTAGTACCATCAGAAACCATCCGAGAAGCTGAAGCCATAGAAGTTGTTGTCATGTCCATTTCCACACCAATAGATTATGAAAAATGTGACCAAAACAACCAAGGCGAAAGGAATGTTGACAAAGAAGATTGTGACGATTTGACAAAAAACAAGGAAGAAGATGATATTGGCATATAG

>Glyma.08g182900.1.p sequence-type=predicted peptide transcript=Glyma.08g182900.1 locus=Glyma.08g182900 ID=Glyma.08g182900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVEMKGICNVLHGLKPVLLMVLVQIAYTAVNVLFKLAINDGMSVKVATAYRLTFGSAFTVPLALISERNKRPKMTWRVLFMACLCGLFGGSLFQNLFYESLALTSATFASALYNLIPAITFVLAISCGFERLNLRVAAGRAKVLGTLLGIGGAMLLTFIKGAEINIWPFHINLMHPDQHQNSHVASLNTDSGNNKLLGAICSLASCFSFALWLTIQAKMSKEYPCHYSSTALMSTAGAIQATAFGFCFERDLTQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAIEVVVMSISTPIDYEKCDQNNQGERNVDKEDCDDLTKNKEEDDIGI*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo