SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.14g039100

Feature Type:gene_model
Chromosome:Gm14
Start:2942279
stop:2945287
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g039100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12110.1AT Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006414GO-bp translational elongation EnsemblGenomesN/AIEA
GO:0006414GO-bp translational elongation JGI N/AIEA
GO:0005853GO-cc eukaryotic translation elongation factor 1 complex EnsemblGenomesN/AIEA
GO:0005853GO-cc eukaryotic translation elongation factor 1 complex JGI N/AIEA
GO:0003746GO-mf translation elongation factor activity EnsemblGenomesN/AIEA
GO:0003746GO-mf translation elongation factor activity JGI N/AIEA
KOG1668 KOG Elongation factor 1 beta/delta chain JGI N/AIEA
PTHR11595Panther ELONGATION FACTOR 1-BETA JGI N/AIEA
PTHR11595:SF5Panther JGI N/AIEA
PF00736PFAM EF-1 guanine nucleotide exchange domain JGI N/AIEA

Proteins Associated with Glyma.14g039100
LocusGene SymbolProtein Name
EF1b translation elongation factor 1b

Expression Patterns of Glyma.14g039100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.14g039100
ParalogEvidenceComments
Glyma.02g276600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g039100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g04350 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g039100
>Glyma.14g039100.1 sequence-type=CDS polypeptide=Glyma.14g039100.1.p locus=Glyma.14g039100 ID=Glyma.14g039100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTCACCTTCTCAGATCCTCACACCGAAGAGGGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATCTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTGTGGAAAAGCCAGGAGACTCTTTTCCTAATGCTGCTAAGTGGTACGATGCCGTCTCTTCTCAACTTGCTCCAAGCTTCCCTGGGCACGCTCAAGGGGTAAGATTCAGTGGCGCTGCTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCTGCCACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTAGTTCCCGTGGGATATGGTATCAAGAAGTTGCAGATCATGATGACTATTGTTGATGACCTTGTATCAGTGGACACTCTTGTTGAGGAACGCTTGACAGTTGAGCCATGCAACGAGTATATCCAGAGCTGTGACATTGTTGCATTCAACAAAATCTAA
Predicted protein sequences of Glyma.14g039100
>Glyma.14g039100.1.p sequence-type=predicted peptide transcript=Glyma.14g039100.1 locus=Glyma.14g039100 ID=Glyma.14g039100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVTFSDPHTEEGIKSLDQFLSGKTYISGDQLTKDDIKVYAAVVEKPGDSFPNAAKWYDAVSSQLAPSFPGHAQGVRFSGAAAPAEAAPAKAAATAEEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLVEERLTVEPCNEYIQSCDIVAFNKI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo