Glyma.16g195600

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Report for Sequence Feature Glyma.16g195600

Feature Type:	gene_model
Chromosome:	Gm16
Start:	35719546
stop:	35722126
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g195600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48270.1	AT	cytochrome P450, family 71, subfamily A, polypeptide 26	JGI	N/A	IEA
GO:0044550	GO-bp	secondary metabolite biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0004497	GO-mf	monooxygenase activity	EnsemblGenomes	N/A	IEA
GO:0005506	GO-mf	iron ion binding	EnsemblGenomes	N/A	IEA
GO:0005506	GO-mf	iron ion binding	JGI	N/A	IEA
GO:0009055	GO-mf	electron carrier activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016705	GO-mf	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	EnsemblGenomes	N/A	IEA
GO:0016705	GO-mf	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	JGI	N/A	IEA
GO:0016709	GO-mf	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	EnsemblGenomes	N/A	IEA
GO:0020037	GO-mf	heme binding	EnsemblGenomes	N/A	IEA
GO:0020037	GO-mf	heme binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
KOG0156	KOG	Cytochrome P450 CYP2 subfamily	JGI	N/A	IEA
PTHR24298	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24298:SF44	Panther		JGI	N/A	IEA
PF00067	PFAM	Cytochrome P450	JGI	N/A	IEA
PWY-7497	SoyCyc9	3β-hydroxysesquiterpene lactone biosynthesis	Plant Metabolic Network		ISS
GN7V-45119	SoyCyc9-rxn	parthenolide 3-hydroxylase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.16g195600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g195600

Paralog	Evidence	Comments
Glyma.09g142900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g195600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g32010	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.16g195600

Limit To All Plant Sequences

>Glyma.16g195600.1 sequence-type=CDS polypeptide=Glyma.16g195600.1.p locus=Glyma.16g195600 ID=Glyma.16g195600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGATCTCTCAGCAAGAAAACTCTTCAAGTTGGTTCTTCCTCCCAGTTGTTACCTTCATCATCCTCTTTCTTTTACGTACTTTCCTCAATCTTTTATCCAACCGGAACAATGATTCCAAAAAACCCTCACCACCATCTCCTCCAAAGCTTCCAATAATAGGAAACCTCCATCAACTTGGTACCCACATTCACCGCAGTCTCCAATCCTTAGCTCAAACCTATGGTTCTTTAATGCTACTTCACTTAGGAAAAGTGCCAGTCCTTGTTGTCTCAACAGCTGAGGCAGCTCGTGAAGTTTTGAAAACACATGACCCCGTTTTCTCCAACAAACCACATCGTAAGATGTTTGATATCCTCTTGTATGGTTCCAAAGATGTGGCATCTGCTCCATATGGCAACTACTGGAGGCAGACAAGGAGTATCCTTGTTTTGCATCTTCTCAGTGCCAAAAAGGTTCAATCCTTCGAGGCAGTGAGAGAAGAGGAAATCTCCATAATGATGGAAAATATTAGGAAGTGTTGTGCATCATTGATGCCTGTGGATTTAACTGGCTTATTTTGTATAGTGGCCAATGATATAGTGTGTAGAGCTGCTCTTGGAAGAAGATACAGTGGAGAAGGAGGGAGTAAGCTTCGCGGGCCGATCAACGAGATGGCGGAGCTGATGGGTACTCCGGTTTTAGGAGACTATTTACCTTGGCTTGATTGGTTGGGGAGAGTTAATGGGATGTATGGTAGGGCAGAGAGAGCGGCTAAAAAGGTTGATGAATTCTTTGATGAAGTTGTTGATGAGCATGTTAATAAGGGAGGCCATGATGGGCATGGTGATGGTGTCAATGATGAAGACCAGAATGATTTGGTGGACATTTTGTTGAGGATCCAAAAGACAAACGCCATGGGATTTGAGATTGATAGAACAACCATAAAGGCTTTGATACTGGATATGTTTGGTGCAGGTACTGAAACTACCTCCACAATTCTAGAGTGGATAATGACAGAACTCTTAAGGCATCCAATAGTGATGCAAAAGCTACAAGGTGAGGTCAGGAATGTGGTTAGAGATAGAACCCACATATCCGAAGAGGATTTGAGTAATATGCATTACTTGAAGGCAGTGATTAAAGAAACTTTTCGATTACATCCCCCAATTACCATATTGGCCCCAAGGGAATCCACGCAAAATACTAAGGTGATGGGCTATGACATTGCAGCTGGCACGCAAGTAATGGTTAATGCTTGGGCAATTGCAAGAGATCCTTCATATTGGGACCAGCCTGAAGAGTTTCAGCCAGAAAGGTTCCTAAATAGTTCAATTGATGTCAAAGGACATGATTTCCAACTGCTCCCATTTGGAGCAGGAAGGAGGGCTTGCCCAGGATTAACATTTTCCATGGTTGTAGTTGAGCTGGTAATAGCAAACCTTGTTCACCAATTTAATTGGGCAATACCTAAAGGAGTGGTGGGGGATCAGACAATGGACATAACTGAAACTACTGGGTTATCCATTCATAGAAAATTTCCTCTTATAGCAATTGCATCCCCACATGCATAA

Predicted protein sequences of Glyma.16g195600

Limit To All Plant Sequences

>Glyma.16g195600.1.p sequence-type=predicted peptide transcript=Glyma.16g195600.1 locus=Glyma.16g195600 ID=Glyma.16g195600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWISQQENSSSWFFLPVVTFIILFLLRTFLNLLSNRNNDSKKPSPPSPPKLPIIGNLHQLGTHIHRSLQSLAQTYGSLMLLHLGKVPVLVVSTAEAAREVLKTHDPVFSNKPHRKMFDILLYGSKDVASAPYGNYWRQTRSILVLHLLSAKKVQSFEAVREEEISIMMENIRKCCASLMPVDLTGLFCIVANDIVCRAALGRRYSGEGGSKLRGPINEMAELMGTPVLGDYLPWLDWLGRVNGMYGRAERAAKKVDEFFDEVVDEHVNKGGHDGHGDGVNDEDQNDLVDILLRIQKTNAMGFEIDRTTIKALILDMFGAGTETTSTILEWIMTELLRHPIVMQKLQGEVRNVVRDRTHISEEDLSNMHYLKAVIKETFRLHPPITILAPRESTQNTKVMGYDIAAGTQVMVNAWAIARDPSYWDQPEEFQPERFLNSSIDVKGHDFQLLPFGAGRRACPGLTFSMVVVELVIANLVHQFNWAIPKGVVGDQTMDITETTGLSIHRKFPLIAIASPHA*

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