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Report for Sequence Feature Glyma02g05580

Feature Type:gene_model
Chromosome:Gm02
Start:4459229
stop:4467748
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19860AT Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:6891654-6894400 REVERSE LENGTH=413 SoyBaseE_val: 3.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23102Panther ZINC FINGER (CLIPPER)-RELATED JGI ISS
PTHR23102:SF17Panther ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN JGI ISS
UniRef100_G7LCY7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LCY7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JCI9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCI9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g049700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g05580.2   sequence type=CDS   gene model=Glyma02g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCGAGCGAGGAAATCCAACAGGGTTTCGTGGGCTACTGGAGAGAACCTGTGTCAGGTAAAATTGTTCTTGTCTGACGATTACCCCTCAATAGTTGGTCAGAAATCACAAGATCATCTTCAAGCAAAGACATCATCAATGTTACATTCTAGTATTAACGAACCTAATGATTTGCCCCCCGGGTTTGAAAGCAGTCATTTCCTAAACCAACCCAAGGTTGAATTATCCAACATTCCCCTGATAAAATGGGAATGCCCTCCTCTGGTTGTTGTCAGATCTCAATGGCGTGTTGCAGCAGGTGAAGAAAGTAGGGAGAAAGAGAATCAGAAACTGAGAGAAATGAGGGTGCTTGAAGCACTTTATCCCCGTCTTTCTGCCATTCCTCCTAGCCCTTCTGTCTCTTTGGATGTAGAAGAGGAAGATTATGATGATGGCATTACTCCTCTCATCCCTATCATTCCCATTGAAGAGGAAGAATCTATGGATATTCTGCCTGAATTGGCAGTAGCACTGAAGCCTTCCCCCAATGTGCAGTCGCAGAACTCTCCACAATATATATCTGCAAAAACCTCCATTAGTTCAGCCTCTAATGCCTCTCCTGCTGTTTCCCATGATCCTTGTGTAAGGCCATTGGCTGAAGCTGATTTAGCAGCAGCCTCTTCAGTTGTTGCAACCATTATAAGGAGTAATGAGCAGGGAACCCTGATTGATATGGATTTACTGGGTAAAATATTTACTGATCCAAAAATACTTGAGCAGTTGATTAATGAACACAGAACTGCAGCTACCACCACAAGTGCGTCCTCAAAGACTGTGGATATACCCACTTCTGGGCAGAAGCCTGCTATTCCATCAGTTCTGTTGTCTACATCTACACCTGATGTGACAGCTTCTGGGACTACACCCACAAGTGCAGTGAGTTCATTACCTTCTGGGTTTTGGTTGAAGCCTTCAAATCCATCAGTTTCATTATTGAATCCTACACCTTGTAAGACACCCACTCTGTCAGTGCCCGCAATTCCATCATTTTCACTATTGTCTTCTACACATGATCAGCCTGTGACTGCATCAGTTCCATTGTCCAGGCCCGTATCTGGTAAGCCAGTAACTCCCTCAGTTTCATTGCTTACACATACTCCTGCGCTTGATATGCACAGGCCTGTCAGCAAAAATTTTCACGTGTCAAGTGGAATGCCCCCTGCTTTAAATAGCCAGTCTCAGCAAGAGACAGCTCTGGCATCTGGGCCAAAGCGAGCCGCATCATTGGCGTCCATACCTTATAGCCAATTAAGCTCTGGTCCATTGCCTTCTGCAGCCGGGAACTTGCGCGCAACTATAAATCAGGCGCAGTCTGCTGCAACCACAATGCCTTATAAACTAAGTACGTGTTCATCAGCTTTTGCAGTAAAGGATGCCAACTACTATAAAAACCTAATCAGGCAACATGGTGCAGACAAGCAAGATATCCAGGACTCACACATAGGTATCCGTCATAGTAACTTCCAAGATATGAAACCGGTACATAATATTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATATTTTAAAAGCCCAAGGGGGTGCCGAAATGGTTCCAATTGCCCCTATCAGCATGATGTTTCAGATCAGTGGGGAGCTGGTAACGTCTTAGGGGCACAGAGTGCTAAAAGATTGAAACTGGGAGGCGATAACTAA

>Glyma02g05580.2   sequence type=predicted peptide   gene model=Glyma02g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRARKSNRVSWATGENLCQVKLFLSDDYPSIVGQKSQDHLQAKTSSMLHSSINEPNDLPPGFESSHFLNQPKVELSNIPLIKWECPPLVVVRSQWRVAAGEESREKENQKLREMRVLEALYPRLSAIPPSPSVSLDVEEEDYDDGITPLIPIIPIEEEESMDILPELAVALKPSPNVQSQNSPQYISAKTSISSASNASPAVSHDPCVRPLAEADLAAASSVVATIIRSNEQGTLIDMDLLGKIFTDPKILEQLINEHRTAATTTSASSKTVDIPTSGQKPAIPSVLLSTSTPDVTASGTTPTSAVSSLPSGFWLKPSNPSVSLLNPTPCKTPTLSVPAIPSFSLLSSTHDQPVTASVPLSRPVSGKPVTPSVSLLTHTPALDMHRPVSKNFHVSSGMPPALNSQSQQETALASGPKRAASLASIPYSQLSSGPLPSAAGNLRATINQAQSAATTMPYKLSTCSSAFAVKDANYYKNLIRQHGADKQDIQDSHIGIRHSNFQDMKPVHNIKQGEVKHKIQKPCIYFKSPRGCRNGSNCPYQHDVSDQWGAGNVLGAQSAKRLKLGGDN*







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