Glyma03g32710 - SoyBase

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Report for Sequence Feature Glyma03g32710

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40490818
stop:	40507525
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g32710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20190	AT	Annotation by Michelle Graham. TAIR10: CLIP-associated protein \| chr2:8711862-8718813 REVERSE LENGTH=1439	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0007026	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of microtubule depolymerization	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0030243	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0043622	GO-bp	Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0050821	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein stabilization	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005876	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: spindle microtubule	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005938	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell cortex	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009524	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast	SoyBase	N/A	ISS
GO:0051010	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule plus-end binding	SoyBase	N/A	ISS
PTHR21567	Panther	CLASP	JGI		ISS
PTHR21567:SF15	Panther	OS04G0507500 PROTEIN	JGI		ISS
PF02985	PFAM	HEAT repeat	JGI		ISS
PF12348	PFAM	CLASP N terminal	JGI		ISS
UniRef100_I1JPB4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPB4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8RWY6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CLIP-associated protein n=3 Tax=Arabidopsis thaliana RepID=Q8RWY6_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g32710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g32710

Paralog	Evidence	Comments
Glyma19g35460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g32710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g170000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g32710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g32710

Limit To All Plant Sequences

>Glyma03g32710.1   sequence type=CDS   gene model=Glyma03g32710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGCTCTGGAACTGTCACGCGCCAAGGACACGAAGGAGAGGATGGCGGGCGTAGAGCGGCTGCATCAACTTCTAGAAGTTTCCAGAAAGAGCCTCTCCTCTTCCGAAGTCACCTCGCTCGTCGACACGTGTATGGATCTCCTCAAGGACAACAACTTCCGCGTCTCCCAGGGCGCTCTCCAGGCCCTCGCCTCCGCCGCCGTCCTCGCCGGTGAACACTTCAAGCTCCACTTCAACGCCCTCCTCCCCGCCGTCGTCGACCGCCTCGGCGACGCCAAGCAGCCCGTCCGCGACGCCGCCCGTCGGCTCCTGCTCACTCTCATGGAGGTTTCTTCTCCTACAATAATTGTTGAAAGAGCAGGGTCCTTTGCTTGGGCACATAAAAGCTGGAGAGTCAGAGAGGAGTTTACACGAACTGTCGCAGCTGCAATTAATCTATTTGCAGCTACTGAGCTTCCACTTCAACGAGCTATCCTCCCCCCTGTTTTGCATTTGCTTAATGATCCAAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAGATGTATACACAAGCTGGACCTCAATTTCGTGACGAACTTCACCGCCACAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTCGAGGGAATTCAACCAAAAGTTCGCTCTTCGGATGGTCCAGGTGGATATATTACTGGGGAAATTAAACATGCAAGTGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCCTCAAGGGAGAACTCTCTTTTTGGAGGAGAAGGTGACATCACTGAGAAACCCGTAGACCCTGTCAAGGTATATTCAGATAAGGAGTTAATCAGGGAATTTGAGAAGATTGCATCTACCCTTGTGCCTGAAAAAGACTGGTCAATTCGAACTGCTGCTCTGCAGAGAGTTGAAGGTCTTGTTCTTGGAGGTGCTGTGGATTATCCATGTTTTCGTGGGCTCCTGAAGCAACTTGTTGGACCTTTAAGCACACAATTGTCAGACCGAAGATCTACCATTGTGAAGCAGGCTTGCCATCTATTGTGCTTTTTGTCAAAGGAACTCTTGGGTGATTTTGAGGCATGTGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATTAAAACGATGCTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCCCGTATAGCCGATTGTGCAAAAAATGATCGCAATGCAGTACTTCGTGCAAGGTGTTGTGAATATGCTTATTTGGTCCTAGAACATTGGCCTGATGCACCTGAAATACATCGATCAGCTGATTTATATGAGGATCTGATAAAGTGTTGTGTTTCAGACGCAATGAGTGAGGTACGGTCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGCGATTCAACGGTTAATAAATGAAGAGGATGGAGGAATACATCGACGACATGCTTCACCTTCCATTCGAGATAGAGGTGCACCGACGTCATTATCTAGCCAGGCCTCTGCTCCCTCTAATCTACCTGGTTATGGAACTTCTGCTATTGTTGCTATGGATAAAAGTTCAAGTATATCATCAGGGACATCTATCTCATCTGGCATACTTCTTTCACAAGCTAAGTCACTTGGTAAGGGTACAGAACGTAGTTTGGAAAGCATGTTACATGCAAGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCAACAAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCAGCTGTCCCCGCATCTAATCATCTGACAAGCTCTTTAACAACAGAATCAACTACTTCCGGCATCAATAAAGGTAGTAACCGAAATGGTGGTCTCGGTTTGTCTGACATAATCACTCAGATTCAAGCTTCGAAAGATTCTGCCAAGTTATCCTATCGTAGTAATGTTGGTATTGAGCCTTTATCATCATATTCGAGTAAAAGGGCATCTGAAAGACAAGAAAGAAGTTCTCTCGATGATAACCATGATATGAGGGAGACTAGGCGATATATGAACCCCAACACTGATAGACAGTATTTGGATGCCCCTTATAGAGATGGAAACTTTAGGGAATCTCATAATAGTTATGTGCCTAATTTCCAGAGACCACTATTGAGAAAGAATGTGGCTGGACGCATGTCTGCTGGCAGGAGGAGTTTTGATGATAATCAGCTATCTCTTGGAGAGATGTCGAATTTTGCAGATGGACCAGCATCTCTTCATGAAGCTTTGAGTGAAGGACTTAGTTCAGGTTCCGATTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTCATTCTTTGTTGCAGCAAGGTCCGAAGGGAACTCTAGAAGTTGTTCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGATCCCCATCATAAAGTTGCACAGGCTGCTCTTTCAACACTTGCAGATATTGTTCCAGCATGCCGAAAGCCTTTTGAGGGTTATATGGAAAGAATATTACCCCATGTGTTTTCTCGGTTAATTGACCCTAAAGAACTTGTCAGGCAGCCGTGTTCAACAACTCTGGAAGTGGTCAGCAAAACTTACAGTATAGATTCTCTCTTACCTGCATTATTACGCTCACTAGATGAACAAAGGTCTCCAAAGGCTAAATTGGCTGTTATTGAATTTGCTATCAATTCCTTTAACAAACATGCTATGAACCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCTATTACATGCATTATATCAGTGTACTCTCACTTTGATTCAACTGCTGTTCTTAATTTCATTCTGAGTTTGTCAGTTGAAGAACAAAATTCCTTGAGACGAGCATTGAAACAATACACCCCTCGCATTGAAGTAGACCTAATAAACTATCTGCAGAACAAGAAAGAGAAACAACGTTCTAAGTCTTCCTATGATCCATCTGATGTTGTGGGAACATCCTCTGAAGATGGATATGTTGGTTACTCTAGGAAAGCTCATTACCTTGGTAGGTATTCTGCTGGTTCACTTGATAGTGATGGTGGCAGGAAATGGAGTTCCCAAGATTCAACACTGATAAAAGCCAGTCTTGGTCAAGCATCTTCTGGTGAAACTCGGGAACATCTGTATCATAATTTTGAGACTGATCCTAATAGTGGCAGCCTTGGTTCAAAAACTAAGGATCTTGCTTATGCCGTCAATCCAATGGGTCAAAACTTTGGCTCTCAAACTAGCCAACATGGACACATGGACAGTAGCGTGAGCTTAGAGGGTCTTTCAACTCCTCGTCTAGATGTAAACGGTTTGATGTCATCAGAGCATTTAAATGGTGCTGAAGGCTATGCAAATGACAAAGAGCATCCTTCTGAATTGGAACTTAATCATCACTCAGCTGAAGATGTAAAAATTAACACCATGACACACACAGGACCCAGCATTCCTCAAATTCTTCATATGATATGCAGTGGGGGTGATGGAAGCCCTATTTCAAGTAAACGGACTGCTCTTCAACAATTGGTTGAAGCTTCTATAACAAATGATCATTCTGTTTGGACCAAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAGTCAAAGAGCTTGCTCTTTCACTGATAGTTGAAATGCTTAAAAACCAGAAAGGTGCCATGGAGAACTCTGTTGAGATTGTAATTGAGAAGCTGCTTCATGTTACAAAAGATATCATTCCTAAGGTCTCGAATGAAGCAGAGCACTGCCTGACCATTGTTCTATCTCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTCTGCTGGTTACCGAGGATGAGAAAACACTCGTTATTTGCATAAATTGCTTAACAAAGCTTGTGGGGCGGCTTTCTCAGGAAGAACTAATGGCTCAGTTACCCTCGTTTCTGCCTGCCCTTTTCGAAGCTTTTGGTAACCAGAGTGCAGATGTTCGGAAGACCGTTGTTTTCTGTCTCGTGGATATTTATATCATGCTTGGGAGAGCATTCTTGCCATATTTGCAAGGGCTTAACAGCACACAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAAGCCAGGACAGGCAAAGCGATTGATGCCGTTCAAGACTAG

Predicted protein sequences of Glyma03g32710

Limit To All Plant Sequences

>Glyma03g32710.1   sequence type=predicted peptide   gene model=Glyma03g32710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEALELSRAKDTKERMAGVERLHQLLEVSRKSLSSSEVTSLVDTCMDLLKDNNFRVSQGALQALASAAVLAGEHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWAHKSWRVREEFTRTVAAAINLFAATELPLQRAILPPVLHLLNDPNPAVREAAILCIEEMYTQAGPQFRDELHRHNLPSSLVKDINARLEGIQPKVRSSDGPGGYITGEIKHASVNPKKSSPKAKSSSRENSLFGGEGDITEKPVDPVKVYSDKELIREFEKIASTLVPEKDWSIRTAALQRVEGLVLGGAVDYPCFRGLLKQLVGPLSTQLSDRRSTIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRNAVLRARCCEYAYLVLEHWPDAPEIHRSADLYEDLIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRLINEEDGGIHRRHASPSIRDRGAPTSLSSQASAPSNLPGYGTSAIVAMDKSSSISSGTSISSGILLSQAKSLGKGTERSLESMLHASKQKVSAIESMLRGLDLSDKHNSSSLRSTSLDLGVDPPSSRDPPFPAAVPASNHLTSSLTTESTTSGINKGSNRNGGLGLSDIITQIQASKDSAKLSYRSNVGIEPLSSYSSKRASERQERSSLDDNHDMRETRRYMNPNTDRQYLDAPYRDGNFRESHNSYVPNFQRPLLRKNVAGRMSAGRRSFDDNQLSLGEMSNFADGPASLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGTLEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKELVRQPCSTTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHAMNPEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLINYLQNKKEKQRSKSSYDPSDVVGTSSEDGYVGYSRKAHYLGRYSAGSLDSDGGRKWSSQDSTLIKASLGQASSGETREHLYHNFETDPNSGSLGSKTKDLAYAVNPMGQNFGSQTSQHGHMDSSVSLEGLSTPRLDVNGLMSSEHLNGAEGYANDKEHPSELELNHHSAEDVKINTMTHTGPSIPQILHMICSGGDGSPISSKRTALQQLVEASITNDHSVWTKYFNQILTVVLEVLDDSDSSVKELALSLIVEMLKNQKGAMENSVEIVIEKLLHVTKDIIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVICINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGRAFLPYLQGLNSTQLKLVTIYANRISQARTGKAIDAVQD*

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