Report for Sequence Feature Glyma03g39050
Feature Type: gene_model
Chromosome: Gm03
Start: 45279743
stop: 45281178
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g39050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G09240 AT
Annotation by Michelle Graham. TAIR10: nicotianamine synthase 3 | chr1:2984950-2985912 FORWARD LENGTH=320
SoyBase E_val: 2.00E-135 ISS
GO:0030418 GO-bp
Annotation by Michelle Graham. GO Biological Process: nicotianamine biosynthetic process
SoyBase N/A ISS
GO:0030410 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nicotianamine synthase activity
SoyBase N/A ISS
PTHR11208 Panther
RNA-BINDING PROTEIN RELATED
JGI ISS
PTHR11208:SF2 Panther
KH-DOMAIN RNA BINDING PROTEIN-RELATED
JGI ISS
PF03059 PFAM
Nicotianamine synthase protein
JGI ISS
UniRef100_B9RFJ1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nicotianamine synthase, putative n=1 Tax=Ricinus communis RepID=B9RFJ1_RICCO
SoyBase E_val: 2.00E-178 ISS
UniRef100_I1JR50 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JR50_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g39050
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g39050
Paralog Evidence Comments
Glyma19g41630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g39050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g231200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g39050
Coding sequences of Glyma03g39050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g39050.1 sequence type=CDS gene model=Glyma03g39050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTTGCGAGGAAGAGTTGTTGATTGAAAAAGTGTGCTCGATCTATGAACAAATCTCAAGCCTCGAGAGTCTCAAACCTTGCAAGAATGTCGACATGCTTTTCACCAAACTAGTCCTGACATGCATACCCCCAAGCCCAATCGAAGTCACAAAGCTAAACAAAACCGTTCAAGACATTCGATCCCACCTTATAAAACTATGTGGTGAAGCCGAGGGACATTTAGAGAGCCACTACTCAACCATCCTAGGCTCATACCAAAACCCTCTTCACCACCTTAATATTTTCCCCTATTATTCCAACTACCTCAAACTTGGTCTCCTTGAGTTCACTATCCTTAGCCAACACTGCACCCATGTTCCAACCAAAGTTGCCTTCGTGGGTTCGGGACCCCTTCCTCTTACCTCAATTGTGTTGGCATCGAACCACTTACCTTCCACCACTTTCCACAACTATGACATGGACCCTTCTGCCAATTCCAACGCCATGCGCTTGGTTTCCTCAGACCCTGACTTGTCCAAGCGCATGTTTTTTCACACCAACGACATATTGGAAGTGTCGACCGCTTTGAAGGAGTACGAGGTTGTTTACTTGGCAGCACTTGTGGGGATGGACAAGGAAGGGAAGAACCGAATCATTGATCACTTGGGGAAGCACATGAACCCTGGGGCACTTCTTATGCTGAGGAGTGCTCATGGGGCAAGGGCTTTTCTCTACCCTGTGGTTGAGCCTTGTGATCTTCGAGGCTTTGAGGTTCTCTCTGTGTTCCACCCTTCCGATGAGGTCGTCAATTCGGTTGTCATCGCACGTAAATTATATCATCCTGTGCCTATGCACTCTCTTGATCAGCAAGCCCTTGTTGGCTCTATGATCCTACCTAACAAGTGTTCCGAGATTCAAGCCTTCAACCCTCTCAACCATGGGAACATGATTGAGGAATTGGCCGTTGAGGAGCAACTCTCGTGA
Predicted protein sequences of Glyma03g39050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g39050.1 sequence type=predicted peptide gene model=Glyma03g39050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVCEEELLIEKVCSIYEQISSLESLKPCKNVDMLFTKLVLTCIPPSPIEVTKLNKTVQDIRSHLIKLCGEAEGHLESHYSTILGSYQNPLHHLNIFPYYSNYLKLGLLEFTILSQHCTHVPTKVAFVGSGPLPLTSIVLASNHLPSTTFHNYDMDPSANSNAMRLVSSDPDLSKRMFFHTNDILEVSTALKEYEVVYLAALVGMDKEGKNRIIDHLGKHMNPGALLMLRSAHGARAFLYPVVEPCDLRGFEVLSVFHPSDEVVNSVVIARKLYHPVPMHSLDQQALVGSMILPNKCSEIQAFNPLNHGNMIEELAVEEQLS*
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