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Report for Sequence Feature Glyma07g18890

Feature Type:gene_model
Chromosome:Gm07
Start:18852618
stop:18854663
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01550AT Annotation by Michelle Graham. TAIR10: lectin receptor kinase a4.1 | chr5:214517-216583 REVERSE LENGTH=688 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF435Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00139PFAM Legume lectin domain JGI ISS
UniRef100_G0Y6Q9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lectin receptor-like kinase n=1 Tax=Gossypium hirsutum RepID=G0Y6Q9_GOSHI SoyBaseE_val: 0ISS
UniRef100_I1KKI5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KKI5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g43570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g154100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g18890.2   sequence type=CDS   gene model=Glyma07g18890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCCAACTCTTGTATTTGTCTTCCTCCTATTTCTCTCTCTCTTACCCCAAGTTATTGCCTCCAAGGCTGTGATTTTTGAAGGATTCGATGATGAAAACAGTGAACTCAATCTTGAAGGATCTTCCATCATCAAAACCAGCCGTTTACTTAAACTCACCAACAGATCAACCAATATTGTAGGCCATGCATTCTATGCCACACCCTTCCAAATGCTTAACAACACAAACCAACCCTATGCTTATTCCTTCAGCACCAATTTTGTTTTCTCAATTGTGTCCCCAAGTTCTGGTTCTGGTGGCTTTGGCCTTGCCTTCACCATAGCACCCTCAACACAGTTTCCTGGGGCTGAGGCTGGCCATTATCTTGGCCTTGTTAACTCCACCAATGATGGGAATGAGTCAAACCACATCTTTGCAGTTGAGTTTGACACAATGAATGGTTACAAAGATGACTCAGACACTGAAGGAAACCATGTTGGGGTAAACATCAATGGCATGGACTCAAATATTACTGAACCAGCTGCATACATTAAAGAGGGCACTGATAAGGTAAAGGAAGATTTTAGAATGGCCAAGGTTGATGCTGTCCAAGCTTGGATAGAATATGATGGTGAAAACAAAACTCTGAATGTAACAATAGCTCCTTTGTCAAAACCAAGGCCAAGCAAACCAATTATAAAGAATCATATCATTGATCTTTACAATGTTATGGAGGAAAGCATGTATGTTGGTTTCTCAGCATCAACAGGCCAGGAAACAAGCTCTCACTATCTTCTAGGGTGGAGTTTTGCAGTGAATGGTGTTGCCCCTCAACTGAAAATTTCCAACCTTCCAAATCCACCACCAAAAGAGAAAGAACCGACATCATTTCCTTGGGTCAATATTGCAATTGGCGTCTTGTCTGCTTCGACTTTTTGCCTCTTGTGTATTCTGTTTTGTATAACATGTTATAGGAGATATTATATGGACTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTTAGGTACAAAGATCTTCACTTAGCCACAAAGGGGTTCATAGAGAGCCATCTCATTGGAGTTGGAGGCTTTGGTGCTGTGTACAAAGGTGTGTTGCCTTCCACGGGAGCTGAGGTTGCTGTCAAGAGGATTGTGAGAAGCCCTTTCCATGGAATGAGGGAATTTGCTGCTGAGATTGAAAGCTTGGGAAGGTTGAGGCACAAGAATTTGGTGAACCTTCAAGGTTGGTGCAACAAAAAGAATGATCTACTCTTGGTCTATGATTTCATCCCAAATGGTAGCCTTGATTATGTCCTATATAAACCCAACAACAACAACTTTGTTTTGAATTGGGGGCAAAGATTCAACATTCTCAAAGGCATTAGTGCTGGACTATTATATTTGCATGAAGAGTGGGAGCAAGTCGTGATCCATAGAGATGTGAAAACTAGCAACATTTTGATAGATGCACACTTGAATGCACGTTTAGGTGACTTTGGACTGGCGAGGCTCTATAACCATGGTCAATTGTCACACACAACAAGTGTGGTTGGCACTATTGGTTACATTGCACCAGAGTTAACTCGCACAGGAAAGGCTTCCACAAGCACAGATGTGTATGCATTTGGGGTTGTGCTCCTTGAAGTTGCCACAGGTAAGAGGCCTCTTGATTCGGATCAGTTTTTCTTGGTGGAGTGGGTTATTGAGAAGTACCACTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTTGATTCACTTTATGATGAGGAAGAAATTGAGTTGGTTCTGAAATTGGGTTTACTTTGCACTCAGCATAGAGCAGATTATAGACCTACCATGAAACAAGTTACAAGGTACTTGAACTTTGATGAACCTCTTCCTGATATTGTTGATTGGGGACATGGTGTTTCTGGGAGCAGTAGATTGAGTTCAGGTTTCTTAGAAGTTACGTATTCTATGGGAACTGTTGAAACATTAGGGTATTTGTCATCCATTAGCATGAGTACTAAGTCCATAGATGCTGGTAGGCAGCAAATAATCATATAG

>Glyma07g18890.2   sequence type=predicted peptide   gene model=Glyma07g18890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASPTLVFVFLLFLSLLPQVIASKAVIFEGFDDENSELNLEGSSIIKTSRLLKLTNRSTNIVGHAFYATPFQMLNNTNQPYAYSFSTNFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAEAGHYLGLVNSTNDGNESNHIFAVEFDTMNGYKDDSDTEGNHVGVNINGMDSNITEPAAYIKEGTDKVKEDFRMAKVDAVQAWIEYDGENKTLNVTIAPLSKPRPSKPIIKNHIIDLYNVMEESMYVGFSASTGQETSSHYLLGWSFAVNGVAPQLKISNLPNPPPKEKEPTSFPWVNIAIGVLSASTFCLLCILFCITCYRRYYMDFEVLEDWEMDCPHRFRYKDLHLATKGFIESHLIGVGGFGAVYKGVLPSTGAEVAVKRIVRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCNKKNDLLLVYDFIPNGSLDYVLYKPNNNNFVLNWGQRFNILKGISAGLLYLHEEWEQVVIHRDVKTSNILIDAHLNARLGDFGLARLYNHGQLSHTTSVVGTIGYIAPELTRTGKASTSTDVYAFGVVLLEVATGKRPLDSDQFFLVEWVIEKYHLGQILEVVDPKLDSLYDEEEIELVLKLGLLCTQHRADYRPTMKQVTRYLNFDEPLPDIVDWGHGVSGSSRLSSGFLEVTYSMGTVETLGYLSSISMSTKSIDAGRQQIII*







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