Glyma07g26831 - SoyBase

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Report for Sequence Feature Glyma07g26831

Feature Type:	gene_model
Chromosome:	Gm07
Start:	29624855
stop:	29649839
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g26831

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14830	AT	Annotation by Michelle Graham. TAIR10: DYNAMIN-like 1C \| chr1:5107699-5111470 REVERSE LENGTH=614	SoyBase	E_val: 0	ISS
GO:0000266	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial fission	SoyBase	N/A	ISS
GO:0007005	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion organization	SoyBase	N/A	ISS
GO:0010152	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen maturation	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005938	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell cortex	SoyBase	N/A	ISS
GO:0009504	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell plate	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0446	KOG	Vacuolar sorting protein VPS1, dynamin, and related proteins	JGI		ISS
PTHR11566	Panther	DYNAMIN	JGI		ISS
PTHR11566:SF12	Panther	DYNAMIN	JGI		ISS
PF00350	PFAM	Dynamin family	JGI		ISS
PF01031	PFAM	Dynamin central region	JGI		ISS
PF02212	PFAM	Dynamin GTPase effector domain	JGI		ISS
UniRef100_E5GB64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dynamin n=1 Tax=Cucumis melo subsp. melo RepID=E5GB64_CUCME	SoyBase	E_val: 0	ISS
UniRef100_I1JDI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDI1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g26831

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g26831

Paralog	Evidence	Comments
Glyma02g09420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g26831 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g171000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g26831

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g26831

Limit To All Plant Sequences

>Glyma07g26831.1   sequence type=CDS   gene model=Glyma07g26831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCATGACGAGCTTGATCGGACTCATCAACAAGATCCAACGTGCGTGCACGGTGTTGGGTGACCATGGCGGCGAGGGAATGTCGCTGTGGGAGGCGCTTCCCACGGTCGCGGTGGTCGGAGGACAGAGTTCAGGGAAATCATCAGTGTTGGAAAGTGTCGTGGGAAGGGATTTTCTGCCTCGGGGATCTGGTATTGTGACACGGAGGCCACTAGTTCTGCAACTTCACAAGACAGATGATGGGCAGCAGGAATATGCTGAGTTTCTTCATGCATCAAGAAAGAGATTCACTGACTTTGCTGCTGTGAGACAGGAAATTTCAGATGAAACAGATCGTATAACTGGGAAGACAAAGGCAATTTCAAACGTTCCAATTCAACTGAGCATATATTCTCCAAATGTTGTGAACTTAACCCTCATAGACCTTCCTGGGTTGACAAAGGTTGCTGTAGAGGGACAATCAGACACCATTGTTCAAGATATTGAGAACATGGTCCGTTCCTATGTTGAGAAGCCCAATTGCATTATATTGGCCATCTCTCCTGCAAACCAAGATATTGCCACTTCAGATGCAATAAAAATTGCAAGAGAAGTTGATCCTTCTGGTGAAAGGACATTTGGGGTGGTTACAAAACTTGATCTTATGGATAAAGGAACTAATGCTGTTGAGGTTCTCGAAGGAAGGCAATACAGGTTGAAACATCCTTGGGTTGGAATTGTCAATCGTTCACAAGCTGATATTAATAAAAACGTTGACATGATTGTCGCTCGCAAGAAGGAACGCGAATATTTTGAGACTAGTCCTGAATATGGACATTTGGCACATAAAATGGGGGCAGAATATCTTGCCAAACTTCTATCAGAGCATTTGGAGTATGTTATTAGGATGAAGATACCTAGTATCATTTCCTTAATAAATAAAGCAATTGATGAGCTTAATGCAGAGTTGGACCGAATTGGCAGGCCAATAGCTGTGGATTCAGGGGCCAAATTATACACAATTTTACAGATGTGTCGAGCATTTGACAAAGTATTTAAAGAACACCTGGATGGAGGACGTCCTGGCGGGGATAGAATATATGGTGTTTTTGACCACCAATTACCAGCTGCTTTAAAAAAGCTCCCATTTAATCGCCATCTTTCCTTAAAGAATGTCGAAAAAGTTGTTATGGAAGCGGATGGTTATCAGCCACATCTAATTGCTCCAGAGCAAGGATATAGAAGACTTATTGAGGGATCTATTGGCTATTTCAAAGGCCCAGCTGAAGCCTCTGTGGATGCTGTACATCTCATTTTAAAGGAGCTTGTACGGAAGTCAATTGCAGCAACTGAGGAATTGAAGAGGTTTCCAACCCTTCAGGCTGATATAGCTGCTGCTGCAAATGATGCTTTAGAACGATTCCGAGAAGAAAGTAGGAGGACTGTGACCCGGATGGTTGATATGGAGTCTGGCTATCTAACAGTGGAATTTTTTCGGAAGATGCATCTTGAACCGGAAAAGAACGCAGATCAAAAGAACCCCAATCGGAGTAATCCTAATCCACCTGTAGACAGTTACACAGATAATCACCTCAGTAAAATTGGATCAAATGTTAATGGTTATATCAACATGGTTTTGGATACACTCAAAAATTCAATACCAAAAGCCGTGGTTCATTGTCAAGTTAGAGAGGCAAAGAGATCATTGCTTAACCATTTTTATGTTCAAGTTGGGAAGAGAGAGAAGGATCAATTGGGGGCTTTGTTGGATGAAGACCCTGCACTTATGGAAAAGAGAGCACAACTAGCTAAAAGGCTTGAATTGTACAAGCAAGCTATGGATGATATTAACTCTGTGGCTTGGAATAAATAA

Predicted protein sequences of Glyma07g26831

Limit To All Plant Sequences

>Glyma07g26831.1   sequence type=predicted peptide   gene model=Glyma07g26831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTDDGQQEYAEFLHASRKRFTDFAAVRQEISDETDRITGKTKAISNVPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQSDTIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKIAREVDPSGERTFGVVTKLDLMDKGTNAVEVLEGRQYRLKHPWVGIVNRSQADINKNVDMIVARKKEREYFETSPEYGHLAHKMGAEYLAKLLSEHLEYVIRMKIPSIISLINKAIDELNAELDRIGRPIAVDSGAKLYTILQMCRAFDKVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFNRHLSLKNVEKVVMEADGYQPHLIAPEQGYRRLIEGSIGYFKGPAEASVDAVHLILKELVRKSIAATEELKRFPTLQADIAAAANDALERFREESRRTVTRMVDMESGYLTVEFFRKMHLEPEKNADQKNPNRSNPNPPVDSYTDNHLSKIGSNVNGYINMVLDTLKNSIPKAVVHCQVREAKRSLLNHFYVQVGKREKDQLGALLDEDPALMEKRAQLAKRLELYKQAMDDINSVAWNK*

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