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SoyBase
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45540 | AT | Annotation by Michelle Graham. TAIR10: WD-40 repeat family protein / beige-related | chr2:18757881-18772229 REVERSE LENGTH=3001 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG1787 | KOG | Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins | JGI | ISS | |
| PTHR13743 | Panther | BEIGE/BEACH-RELATED | JGI | ISS | |
| PTHR13743:SF19 | Panther | NEUTRAL SPHINGOMYELINASE (N-SMASE) ACTIVATION ASSOCIATED FACTOR FAN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF02138 | PFAM | Beige/BEACH domain | JGI | ISS | |
| UniRef100_G7L1D4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Neurobeachin-like protein n=1 Tax=Medicago truncatula RepID=G7L1D4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7L1D4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Neurobeachin-like protein n=1 Tax=Medicago truncatula RepID=G7L1D4_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma09g40353 not represented in the dataset |
Glyma09g40353 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g45582 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g40353.1 sequence type=CDS gene model=Glyma09g40353 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAATGGCCTGAGTGGATTCTGGAAGTCCTGATCTCAAACTATGAGGTGGGTCCAATTAAATTATCTGATTCCACAACCATTGGAGACATAGAAGACCTTATTCATAATTTCCTTAGCATCATGCTAGAGCATTCAATGCGTCAAAAGGATGGATGGAAGGATATTGAAGAGACTATTCATTGTGCAGAATGGCTTTCTATTGTTGGTGGATCTAGCACTGGAGAACAGCGACTAAGACGTGAAGAATCGTTACCTATTTTTAAGAGGAGACTTTTAGGAGGCTTGCTGGATTTTGCTGCTAGAGAATTGCAGGTTCAGACTCAAATTATTGCTGCGGCTGCTGCTGGTGTTGCAGCTGAGGGTTTGTCACCAAAAGATGCTAAGGCTGAAGCTGAGAATGCTGCCCAGTTGTCTGTGGCTTTAGTAGAGAATGCCATTGTGATTCTTATGCTTGTTGAAGATCATTTACGACTACAGAGAAAGCAATCCTCTTCTGCACATGCTCCAGATAGTTTGCCATCTCCACTTTCTGCTGTGCATGCAACCAATAATCACTCAAATTCATTGTCAACAATTGAAGAATCAATAGAAGTTGTGGATGATTGCAGGTCACTAGATAGTGACTCCGGGGGAGTCCCTCTAGATGTCCTTTCTTCAATGGCTGATGGAATTGGTCAGATCCCTACTCCAGTGATGGAAAGGCTTGCTGCAGCAGCAGCAGCTGAGCCTTACGAATCTGTTTCTTGTGCTTTTGTGTCATATGGGTCCTGTGCTAAGGATTTAGCAGATGGCTGGAAATATAGGAGCCGTTTGTGGTATGGTGTCAACCTGTCTCCAAGTCCAGCTCCATTTGGTGGTGGTGGGAGTGGATGGGATTTTTGGAAGTCTGCTATTGAGAAAGATGCCAATGGAAACTGGATTGAGCTTCCTTTGGTGAAGAAGTCAGTGGCAATGCTCCAAGCGTTATTGCTAGATGAGTCTGGGCTTGGTGGTGGTCTTGGTATAGGTGGAGGGTCAGGTACAGGAATGGGAGGGATGGCTGCTCTGTACCAGCTGTTAGATAGTGACCAGCCATTCTTATGCATGCTTCGAATGGTTCTTCTATCGATGAGAGAAGATGATGATGGCGAAGATCATATGCTGATGAGAAATACAAGTTTTGAGGATGCAGTGTCTGAAGGAAGAAAACCACGGTCAGCACTTTTGTGGAGTGTTCTCTCACCTGTTCTCAACATGCCAATTTCTGATTCTAAGAGGCAAAGAGTTTTGGTAGCATGTTGCGTGCTTTATTCTGAGGTATACCATGCTGTTAGCAGAGATCAAAAGCCTCTTCGTAAACAGTACCTTGAAGCTATTTTACCACCATTTGTTGCTGTATTAAGGAGGTGGCGCCCCCTTTTGGCTGGCATTCATGAGCTTGCTACTGCTGATGGCTCAAATCCTCTTATTGCAGATGATCGTGCATTAGCTGCTGATTCCTTGCCAATTGAGGCCGCTCTTGCTATGATATCTCCAGCTTGGGCTGCTGCTTTTGCATCTCCACCTGCTTCAATGGCATTGGCTATGGTTGCGGCTGGTACTTCAGGTGGTGAAAGCCGTGCTCCTGCAACAACTTCCCAGCTTAGGCGTGATACTTCATTGATGGAACGGAAACAGACTAAACTCACTACGTTTTCAAGCTTTCAAAAACCTTCAGAAGTCCCTAATAAAACATCACCTCTTCCGAAGGACAAAGCTTCTGCAAAAGCTGCTGCTTTGGCAGCTGCTCGTGATCTTGAGAGATTTGCAAAAATTGGTTCTGGAAGAGGTCTTAGTGCTGTTGCAATGGCCACATCTGCACAGCGGAGGAATGCTAGTGATATGGAGCGGGTTAAGAGATGGAATATTTCTGAAGCAATGGGTGTTTCCTGGATGGAATGTTTGCACCCCGTTGATACAAAGGCGGTATATGGGAAAGACTTTAATGCCTTTTCTTATAAATATATCGCTGTTCTTGTTGCCAGTTTTGCCCTAGCAAGGAATATGCAACGGTCTGAGATTGACAGGCGTGCTTATGTAGATGTAATTTCTCGGCATCGAATCAGTACTGGAGTCCGCGCATGGCGCAAACTTATTCACCGGTTATTAGAAATGAGAAGTCTTTTTGGGCCTTTTGCAGATCATTTATACAGTCCACCTTGTGTTTTCTGGAAGCTAGATTTAATGGAAAGTTCTTCAAGGATGAGAAGATGTTTGAGGAGGAATTATCATGGCTCCGACCATTTAGGTTCTGCAGCCAATTATGAGGATTATTCTGGGGAGAAAAATGACCAGCACACTCCAATTTTGTCGGCAGAAGCAATCTCATTGGAGACAGTCAATGAAGATGAAGAACAGGTGGAAATTGAGAATTTGAATGCCAGGGCCAGTGATGTTGATGATAAAGGAGACAATCAGACTAGACTGTCTGAAACAGCTGATCAATCTGTTCAGGAAGCTTTAGAATCCAGTGCTACTCAACATGCAAGTGATGAAGACCTTGTCCAGAGTTCTTCAGCCATTGCACCTGGGTATGTACCTAGTGAACTTGATGAAAGAATTGTTCTTGAGCTACCGTCATCAATGGTCCGACCGCTTAAGGTCATACGGGGAACCTTTCAAGTAACCAATAGGAGGATAAATTTTATAGTTGATAACAGTGAGACCAGCACCACAATGGATGGTTCTGATTCCATTGTTGAGGCAGGTAAACAAGAAAAAGATCGCAGCTGGCTAATGTCATCTCTTCATCAAATTTATAGCCGGAGATACCTCCTTAGAAGAAGTGCTCTGGAGTTATTTATGGTGGACCGTTCAAACTTCTTCTTTGATTTTGGGAATGGTGAAGGGCGAAGAAATGCATATCGCACAATTGTTCAAGCACGACCTCCCCATTTAAACAATATATATTTGGCTACTCAGAGGCCTGAACAACTTTTAAAGAGAATTCAACTTATGGAACGCTGGGCTAGGTGGGAGATCAGCAATTTTGAATATCTAATGCAACTCAATACACTGGCTGGGCGTAGTTATAATGATATTACCCAATATCCGGTTTTCCCCTGGATTCTTTCTGATTACAGTGCAGAGAGCTTGGATCTTTCTAATCCTTCTTCTTATCGAGACCTTTCGAAGCCTATTGGTGCACTCAACCCTGATCGTTTGAATAGATTTCAAGAGAGATATGCTAGCTTTGATGATCCAGTCATCCCCAAATTCCATTATGGATCACACTACTCAAGTGCCGGAACAGTTTTGTATTATCTTGTTAGGGTTGAACCGTTCACTACCCTTGCAATCCAACTGCAAGGTGGAAAATTTGACCATGCAGATCGGATGTTTTCTGATATTTTTGCTACTTGGAATGGAGTTCTTGAGGACATGAGTGATGTAAAGGAATTGGTTCCTGAGCTATTTTACCTACCTGAGGTCCTCACAAATGAAAATTCAATTGATTTTGGCACAACACAAATGGGAGGAAAGCTTGATACTGTAAAGCTTCCTGCTTGGGCTGAAAATCCAATTGATTTTATTCACAAGCACCGGAAGGCTCTAGAGAGCGAGTATGTATCTGCTCATTTGCATGAGTGGATTGACCTCATATTTGGGTATAAGCAACGAGGCAAGGAAGCTGTTACAGCAAATAATGTTTTCTTTTATACTACCTATGAAGGGACAGTGGATCTTGATAAAATCTCTGACCCAGTACAACAGCGTGCCATACAAGATCAGATTGCTTATTTTGGACAAACACCATCCCAACTTCTGACTGTTCCTCACTTGAAGAAAATGCCATTAGCAGAAGTTCTGCATTTGCAGACAATATTCCGTAACCCAAAAGAAGTCAAACCATATGCTGTTCCATTCCCAGAACGCTGCAATCTTCCTGCAGCTGCCATTCATGCATCTTCAGATACGGTTGTGGTTGTTGACATGAATGCACCAGCAGCTCATGTTGCCCAACACAAGTGGCAACCCAATACACCTGATGGCCAGGGTACTCCTTTCCTCTTTCAACATAGAAAAGCTACATTAGCCTCTGCTGGTGGTACAATTATGCGCATGTTCAAAGCACCGGCTGCATCTGGTGGGGAGTGGCAATTCCCCCAAGCAGTAGCATTTGCTGTCTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACAAGCAACAAAGAAGTTATTACTGGTGGGCATGCTGATAATAGTATTAGGCTAATATCCTCAGATGGAGCTAAAACATTAGAAACAGCTTATGGGCACTGTGCTCCTGTAACTTGCCTTGGTCTTTCACCTGATAGTAATTACCTAGTTACAGGATCCCGAGACACAACAGTATTACTCTGGAGAATACATAGGGCACTTTCATCTCACTCAAGTGCCGTATCAGAACACTCCACTGGGACAGGCACATTGTCTTCAACCAGTAATAGTTCATCGCACTTGATAGAAAAAGACCGGAGACGTCGAATCGAGGGTCCTATACAGGTACTTCGGGGGCACCACAGTGAAATACATAGTTGTTGTGTTAACTCAGATCTTGGGATAGTTGTTTCCTGCTCCCATTCATCAGATGTCCTCTTGCACTCCATAAGAAGGGGACGTTTAATTAGAAGGCTCGATGGTGTGGAGGCCCATACTGTTTGCCTTTCCTCTGAAGGGGTTGTAATGACCTGGAATGAATCACAGCATACTCTCAGTACTTTTACACTCAATGGTACTCCGATTGCAAGAGCACAGTTATCTTTCTCTTGCAGTATCAGTTGCATGGAAATTTCTGTTGATGGGACAAGTGCTTTGATTGGCATGAATTCCCTTGAAAATGGTAGAGCCTATAATAGCAGTCCGGATTCACAGTCGAATAAGTCAGGTGTTGTTGATTTTGATTCAGAATCAGAAGAAACTTTTGATTACACCCAAATAGATGTTCGATCACCATCAATTTGCTTCCTGCATATGCACACTCTGGAGGTATTTCATGTATTGAAGCTGGGAGAAGGACAGGATATCACAGCTCTGGCTCTAAACAAGGATAACACAAATCTTTTGGTTTCCACTTTGGATAAACAATTGATAATCTTCACTGACCCAGCTTTAAGCTTGAAAGTGGTCGATCAAATGCTCAAGCTTGGATGGGAAGGTGATGGGCTTCAGCCTCTCATAAAATCATAG
>Glyma09g40353.1 sequence type=predicted peptide gene model=Glyma09g40353 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEWPEWILEVLISNYEVGPIKLSDSTTIGDIEDLIHNFLSIMLEHSMRQKDGWKDIEETIHCAEWLSIVGGSSTGEQRLRREESLPIFKRRLLGGLLDFAARELQVQTQIIAAAAAGVAAEGLSPKDAKAEAENAAQLSVALVENAIVILMLVEDHLRLQRKQSSSAHAPDSLPSPLSAVHATNNHSNSLSTIEESIEVVDDCRSLDSDSGGVPLDVLSSMADGIGQIPTPVMERLAAAAAAEPYESVSCAFVSYGSCAKDLADGWKYRSRLWYGVNLSPSPAPFGGGGSGWDFWKSAIEKDANGNWIELPLVKKSVAMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMVLLSMREDDDGEDHMLMRNTSFEDAVSEGRKPRSALLWSVLSPVLNMPISDSKRQRVLVACCVLYSEVYHAVSRDQKPLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGSNPLIADDRALAADSLPIEAALAMISPAWAAAFASPPASMALAMVAAGTSGGESRAPATTSQLRRDTSLMERKQTKLTTFSSFQKPSEVPNKTSPLPKDKASAKAAALAAARDLERFAKIGSGRGLSAVAMATSAQRRNASDMERVKRWNISEAMGVSWMECLHPVDTKAVYGKDFNAFSYKYIAVLVASFALARNMQRSEIDRRAYVDVISRHRISTGVRAWRKLIHRLLEMRSLFGPFADHLYSPPCVFWKLDLMESSSRMRRCLRRNYHGSDHLGSAANYEDYSGEKNDQHTPILSAEAISLETVNEDEEQVEIENLNARASDVDDKGDNQTRLSETADQSVQEALESSATQHASDEDLVQSSSAIAPGYVPSELDERIVLELPSSMVRPLKVIRGTFQVTNRRINFIVDNSETSTTMDGSDSIVEAGKQEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGNGEGRRNAYRTIVQARPPHLNNIYLATQRPEQLLKRIQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSAESLDLSNPSSYRDLSKPIGALNPDRLNRFQERYASFDDPVIPKFHYGSHYSSAGTVLYYLVRVEPFTTLAIQLQGGKFDHADRMFSDIFATWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQMGGKLDTVKLPAWAENPIDFIHKHRKALESEYVSAHLHEWIDLIFGYKQRGKEAVTANNVFFYTTYEGTVDLDKISDPVQQRAIQDQIAYFGQTPSQLLTVPHLKKMPLAEVLHLQTIFRNPKEVKPYAVPFPERCNLPAAAIHASSDTVVVVDMNAPAAHVAQHKWQPNTPDGQGTPFLFQHRKATLASAGGTIMRMFKAPAASGGEWQFPQAVAFAVSGIRSQAIVSITSNKEVITGGHADNSIRLISSDGAKTLETAYGHCAPVTCLGLSPDSNYLVTGSRDTTVLLWRIHRALSSHSSAVSEHSTGTGTLSSTSNSSSHLIEKDRRRRIEGPIQVLRGHHSEIHSCCVNSDLGIVVSCSHSSDVLLHSIRRGRLIRRLDGVEAHTVCLSSEGVVMTWNESQHTLSTFTLNGTPIARAQLSFSCSISCMEISVDGTSALIGMNSLENGRAYNSSPDSQSNKSGVVDFDSESEETFDYTQIDVRSPSICFLHMHTLEVFHVLKLGEGQDITALALNKDNTNLLVSTLDKQLIIFTDPALSLKVVDQMLKLGWEGDGLQPLIKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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