Report for Sequence Feature Glyma12g01380
Feature Type: gene_model
Chromosome: Gm12
Start: 817497
stop: 821309
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g01380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G41540 AT
Annotation by Michelle Graham. TAIR10: 6-phosphogluconate dehydrogenase family protein | chr2:17326801-17328654 FORWARD LENGTH=462
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0006072 GO-bp
Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate metabolic process
SoyBase N/A ISS
GO:0009413 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to flooding
SoyBase N/A ISS
GO:0046168 GO-bp
Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate catabolic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009331 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: glycerol-3-phosphate dehydrogenase complex
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0004367 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0016614 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors
SoyBase N/A ISS
GO:0016616 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
SoyBase N/A ISS
GO:0050662 GO-mf
Annotation by Michelle Graham. GO Molecular Function: coenzyme binding
SoyBase N/A ISS
GO:0051287 GO-mf
Annotation by Michelle Graham. GO Molecular Function: NAD binding
SoyBase N/A ISS
KOG2711
KOG
Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase
JGI ISS
PTHR11728 Panther
GLYCEROL-3-PHOSPHATE DEHYDROGENASE
JGI ISS
PF01210 PFAM
NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
JGI ISS
PF07479 PFAM
NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
JGI ISS
UniRef100_G7JUR3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JUR3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LNZ9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNZ9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g01380
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma12g01380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g011200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g01380
Coding sequences of Glyma12g01380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g01380.1 sequence type=CDS gene model=Glyma12g01380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTTGGAAACGGTGAAGCCGTGACTCACAGTGCATGCTCCAATGGTTCTGTCCAAACTGTAAATGGCAATTTGGAAGAGAAGCTTGATGAACTTCGTCTGCTAATGGGGAAAGTGGATGGTGATCCACTGAGAATAGTTGGTGTTGGAGCTGGGGCTTGGGGTAGTGTATTCACAGCTATGTTGCAGGAGGCTTATGGTGGTTTAAGAGAAAAGGTTCTGATTAGGATATGGAGAAGACCCGGAAGAACGGTTGATAGAGCCTTGGCTAAGCATTTGTTTGAGGTTATCAATTCGAGGGAGGATGTATTGAGAAGGCTGATTAGGCGATGTGCGTATTTGAAATATGTTGAGGGAAGATTGGGTGATCGTGTCCTTTATGCAGATGAGATTTTGAAAGATGGATTTTGCTTGAACATGATTGACACCCCTCTTTGCCCTCTCAAGGTTGTCACAAACCTGCAGGAGGCTGTGTGGGACGCAGATATTGTGATTAATGGCTTGCCATCAACGGAAACCCGTGAGGTATTTGAAGAAATTAGCAAGTACTGGAAAGAGAGAATCACAGTGCCTGCCATCATTTCCTTAGCAAAGGGTGTGGAGGCAGAATTGGGGCCTGAACCACGGATAATAACTCCCACGCTAATGATCAATCAAGCAACTGGAGTCCCCATTGAGAACATCCTTTACCTTGGAGGTCCTAACATTGCCTCAGAAATTTACAACAAGGAATATGCAAACGCTAGGATATGTGGGGCAGAAAAGTGGAGGAAACCACTGGCAAAATTTTTGAGGCAGCCCCACTTTATAGTGTGGGATAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGATTAAAGAATGTATATGCTATTGGAGCAGGAATGGTAGCCGCTTTAACAAATGAGAGTGCCACCAGCAAGTCAGTGTACTTTGCTCACTGCACATCTGAGATGATTTTTATAACTCATCTATTGGCAGAAGAACCAGAAAGACTGGCAGGGCCTCTCTTGGCTGATACGTATGTAACGTTGTTGAAAGGTCGCAATGCATGGTATGGGCAAAAGTTGGCCAAAGGGGAGTTGAGCCTTGAAATGGGTGACAGCATCAAGGGCAAGGGGACAATTCAGGGAGTCTCTGCAGTTAAAGCATTCTATGAGCTACTTAGTCAGTCCAGCTTAAATGTCCTAAATCCTGAAGAAAACGAGCTCGTTGCCCCAGTGGAGCTTTGCCCCATCTTGAAGATGTTATATAAAATACTAATAATTAGGGAATCTCCAGTAGAGGCAATTCTTCAAGCATTGCGAGATGAGACAATGAATGATCCTCGTGACCGTATTGAGATTGCCCAAAGCCATGTGTTTTACAGACCATCACTTCTTGGTCACCAGCCTTAA
Predicted protein sequences of Glyma12g01380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g01380.1 sequence type=predicted peptide gene model=Glyma12g01380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFGNGEAVTHSACSNGSVQTVNGNLEEKLDELRLLMGKVDGDPLRIVGVGAGAWGSVFTAMLQEAYGGLREKVLIRIWRRPGRTVDRALAKHLFEVINSREDVLRRLIRRCAYLKYVEGRLGDRVLYADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETREVFEEISKYWKERITVPAIISLAKGVEAELGPEPRIITPTLMINQATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPERLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGTIQGVSAVKAFYELLSQSSLNVLNPEENELVAPVELCPILKMLYKILIIRESPVEAILQALRDETMNDPRDRIEIAQSHVFYRPSLLGHQP*
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