Glyma13g25497 - SoyBase

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Report for Sequence Feature Glyma13g25497

Feature Type:	gene_model
Chromosome:	Gm13
Start:	28743311
stop:	28749622
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g25497

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04980	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr5:1468575-1470684 REVERSE LENGTH=466	SoyBase	E_val: 2.00E-179	ISS
GO:0032957	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process	SoyBase	N/A	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0565	KOG	Inositol polyphosphate 5-phosphatase and related proteins	JGI		ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PTHR11200:SF29	Panther	INOSITOL PHOSPHATASE SKIP	JGI		ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_G7L6W3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Type I inositol-1,4,5-trisphosphate 5-phosphatase n=2 Tax=Medicago truncatula RepID=G7L6W3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B94B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B94B related cluster n=1 Tax=unknown RepID=UPI000233B94B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g25497

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g25497

Paralog	Evidence	Comments
Glyma15g35250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g25497 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g185500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g25497

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g25497

Limit To All Plant Sequences

>Glyma13g25497.2   sequence type=transcript   gene model=Glyma13g25497   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAAAATGCTTTTTTTCGTTGGCTCTTGAAAAGAACCCCTTTTTGGTTTTCAAATAGAGTAAACACCAAGAACAAACGGACCAATCATGGCCTTTGCCACACACCTCAAAAAGTTAATTTAATAATAAATACTATCAACGAAGAGGGCACATGAGATTCTATTATTCCATTCTCCCTTTTGACTGTTTCCTTTTTATCTCTTTTCTTTTCTATTTTATTGTTTCTGAATTTTTCATTCCATTTTCTTGAGTAGGGAGGACCTACTCTCCCTATTTGTACCTATTCCTATTTCTCTGTCACCTCTTCTATCCTTTTTGATATCATCAAATACTTGTTTGGTATATATGTCAAGTTTTATGGCTCTTTGGAAGAGAAAGTTTGGACCCTTTTGTTGCACACAAGAGTAAGAGTTCTCAGTTCTAGCTACAAGGATTATGCAGATGGACATCGAATTTGAGGATAGACAAGAAGAAACAGTTTCAGATATGATACCAAGCAATCGGCAGAGGAAAAAACAGTCGTTTCTGTGGAAAGTTTTGGCCATGAGAGAGAGAAATGGAAGGACAATAGAGAGAAGTTCTAATGATTCCCTTGATCCACTTTCTGTTTCATCTTTTGACAATCGAGGCTCAGAACCTTCTATGCCTTCTAATGAAGCAATTCAAAATTTCAGAGTTTTTGCAGCAACATGGAATGTAGGAGGGCAATGCCCCACTGGAAACCTTGATCTGAGTGATTTTCTTCAGGTTCGAAATGAACCAGATATGTATGTTTTGGGCTTTCAGGAGATTGTCCCTTTAAATGCTGGAAATGTGCTGGTATTAGAGGATAATGAGCCTGCTGCAAAATGGCTTGCTTTAATCAACCAATCACTCAATGGTTCTTCAGATTTGGCTTCTAAAGGACTAAAACCGACCGCGTCTTTTGGAGGCCCATTGTTCTCACAAAAGCCTTCTTTGAAGAAGATTAAGAAAACTTTCAAGAAACTAAATGGAAAGAGGCTAAGAAGTTGTAACTGTGTTCTTGAAATGGAAAGGAAGGCTGGTAAGGATTTCTGTTTTCGCTGCCAAGAATCAAACTTCAATTCAGATGATTCTTCCACCGAAGAGGAGGATGAGAACTTCCCAATTCCTGTTGCATTGGCTACTAGTCAGATGAAATACAGTCTTGTTACATGTAAGCAAATGGTTGGAATTTTTGTAAGTGTCTGGATGAGGAGGGAACTTGTTCAGTATGTAGGCCATTTGAGAATATGTTGCATTAGCCGCGGGATCATGGGTTGCCTTGGGAACAAGGGGTGTATATCAGTGAGCATGTCATTTTATCAGACAAGTTTTTGCTTTATCTGTAGTCATTTGGCTTCTGGAGAGAAAGAAGGTGATGAGCTTCGCAGAAACCTTGATGTCATAGAGATTCTAAAGAACACTCAGTTTCCAAGGATTTGCAAGACACCACATAGTAGGATGCCTGACAAAATCTTAGATCATGACCGAATCATATGGTTTGGAGACTTGAATTACAGAATTTCATTGAGCCATGATGATGCAAAAAGGCTTGTGGAAAAGAGGGACTGGCCTGCTCTTTTTAACAAGGATCAGCTTAAAATGGAAAGGGAAGCAGGTCGTGTATTCAAGGGGTGGAAAGAGGGAAAGATCTACTTTGCACCTACTTATAAATATGCCTTCAACTCAGACACTTACTATGTTGAAGGTGTAAAAGTTTCAAAGAACAAAAGGAGAACTCCAGCTTGGTGCGATAGAATCTTGTGGCATGGAGGGGGAATACAGCAACTTTCGTACGTCCGCAGAGAATTTAAGTTCTCTGACCATCGACCGGTTTGTGCAACATTTAATGTAGAAGTTGAGGTTATGTTCAGGGGACAGAAGAAGAAAGTTTCAACTTGCAACTTTCAGAACATTCATGATCTTGTATCCACAAGAAGTCCATATTATTCTTGAAAATTCGTGAAGAAATTTTTGAAGGTTTTGGAAAGCATCAAGAAGCATATGCATCCAGAATCGAAGAAGCTATGAAAATGCAATAGAAATGTTATTAGAATTAACTTCTTTTCTTTTTTATTAAAAAAAGGGGGAAACAACAAGTTCCTATATTAGCTACTAAAGAACAATCTGTCAGTGCTTTATTTTTGGGACTATATATAGGAACTAGGCATTGGTAGATTGAGGGATGGGAACAGAACCTAGCTTCTCACGTAAGTGAAGAGCCTAGGTTATATGAAATGAGTATATAGCTATATTTATTTTTCCTAATGCTGCTTACATTGCAGTTAAGTGTTAACCAAGATATATGTGTTAATTAAAGTTGCTTTGTTATATGTGTTAACCTCAATCTGGATACTTGAGGTTGTCCCTTGCTACAAAGTGTTTTCATGTGGACTCAAACCTCTAAAATTGAGGTTCCTCATCGGTTGGATTCAGTATCGTTAATTTGT

Coding sequences of Glyma13g25497

Limit To All Plant Sequences

>Glyma13g25497.1   sequence type=CDS   gene model=Glyma13g25497   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATGGACATCGAATTTGAGGATAGACAAGAAGAAACAGTTTCAGATATGATACCAAGCAATCGGCAGAGGAAAAAACAGTCGTTTCTGTGGAAAGTTTTGGCCATGAGAGAGAGAAATGGAAGGACAATAGAGAGAAGTTCTAATGATTCCCTTGATCCACTTTCTGTTTCATCTTTTGACAATCGAGGCTCAGAACCTTCTATGCCTTCTAATGAAGCAATTCAAAATTTCAGAGTTTTTGCAGCAACATGGAATGTAGGAGGGCAATGCCCCACTGGAAACCTTGATCTGAGTGATTTTCTTCAGGTTCGAAATGAACCAGATATGTATGTTTTGGGCTTTCAGGAGATTGTCCCTTTAAATGCTGGAAATGTGCTGGTATTAGAGGATAATGAGCCTGCTGCAAAATGGCTTGCTTTAATCAACCAATCACTCAATGGTTCTTCAGATTTGGCTTCTAAAGGACTAAAACCGACCGCGTCTTTTGGAGGCCCATTGTTCTCACAAAAGCCTTCTTTGAAGAAGATTAAGAAAACTTTCAAGAAACTAAATGGAAAGAGGCTAAGAAGTTGTAACTGTGTTCTTGAAATGGAAAGGAAGGCTGGTAAGGATTTCTGTTTTCGCTGCCAAGAATCAAACTTCAATTCAGATGATTCTTCCACCGAAGAGGAGGATGAGAACTTCCCAATTCCTGTTGCATTGGCTACTAGTCAGATGAAATACAGTCTTGTTACATGTAAGCAAATGGTTGGAATTTTTGTAAGTGTCTGGATGAGGAGGGAACTTGTTCAGTATGTAGGCCATTTGAGAATATGTTGCATTAGCCGCGGGATCATGGGTTGCCTTGGGAACAAGGGGTGTATATCAGTGAGCATGTCATTTTATCAGACAAGTTTTTGCTTTATCTGTAGTCATTTGGCTTCTGGAGAGAAAGAAGGTGATGAGCTTCGCAGAAACCTTGATGTCATAGAGATTCTAAAGAACACTCAGTTTCCAAGGATTTGCAAGACACCACATAGTAGGATGCCTGACAAAATCTTAGATCATGACCGAATCATATGGTTTGGAGACTTGAATTACAGAATTTCATTGAGCCATGATGATGCAAAAAGGCTTGTGGAAAAGAGGGACTGGCCTGCTCTTTTTAACAAGGATCAGCTTAAAATGGAAAGGGAAGCAGGTCGTGTATTCAAGGGGTGGAAAGAGGGAAAGATCTACTTTGCACCTACTTATAAATATGCCTTCAACTCAGACACTTACTATGTTGAAGGTGTAAAAGTTTCAAAGAACAAAAGGAGAACTCCAGCTTGGTGCGATAGAATCTTGTGGCATGGAGGGGGAATACAGCAACTTTCGTACGTCCGCAGAGAATTTAAGTTCTCTGACCATCGACCGGTTTGTGCAACATTTAATGTAGAAGTTGAGGTTATGTTCAGGGGACAGAAGAAGAAAGTTTCAACTTGCAACTTTCAGAACATTCATGATCTTGTATCCACAAGAAGTCCATATTATTCTTGA

>Glyma13g25497.2   sequence type=CDS   gene model=Glyma13g25497   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATGGACATCGAATTTGAGGATAGACAAGAAGAAACAGTTTCAGATATGATACCAAGCAATCGGCAGAGGAAAAAACAGTCGTTTCTGTGGAAAGTTTTGGCCATGAGAGAGAGAAATGGAAGGACAATAGAGAGAAGTTCTAATGATTCCCTTGATCCACTTTCTGTTTCATCTTTTGACAATCGAGGCTCAGAACCTTCTATGCCTTCTAATGAAGCAATTCAAAATTTCAGAGTTTTTGCAGCAACATGGAATGTAGGAGGGCAATGCCCCACTGGAAACCTTGATCTGAGTGATTTTCTTCAGGTTCGAAATGAACCAGATATGTATGTTTTGGGCTTTCAGGAGATTGTCCCTTTAAATGCTGGAAATGTGCTGGTATTAGAGGATAATGAGCCTGCTGCAAAATGGCTTGCTTTAATCAACCAATCACTCAATGGTTCTTCAGATTTGGCTTCTAAAGGACTAAAACCGACCGCGTCTTTTGGAGGCCCATTGTTCTCACAAAAGCCTTCTTTGAAGAAGATTAAGAAAACTTTCAAGAAACTAAATGGAAAGAGGCTAAGAAGTTGTAACTGTGTTCTTGAAATGGAAAGGAAGGCTGGTAAGGATTTCTGTTTTCGCTGCCAAGAATCAAACTTCAATTCAGATGATTCTTCCACCGAAGAGGAGGATGAGAACTTCCCAATTCCTGTTGCATTGGCTACTAGTCAGATGAAATACAGTCTTGTTACATGTAAGCAAATGGTTGGAATTTTTGTAAGTGTCTGGATGAGGAGGGAACTTGTTCAGTATGTAGGCCATTTGAGAATATGTTGCATTAGCCGCGGGATCATGGGTTGCCTTGGGAACAAGGGGTGTATATCAGTGAGCATGTCATTTTATCAGACAAGTTTTTGCTTTATCTGTAGTCATTTGGCTTCTGGAGAGAAAGAAGGTGATGAGCTTCGCAGAAACCTTGATGTCATAGAGATTCTAAAGAACACTCAGTTTCCAAGGATTTGCAAGACACCACATAGTAGGATGCCTGACAAAATCTTAGATCATGACCGAATCATATGGTTTGGAGACTTGAATTACAGAATTTCATTGAGCCATGATGATGCAAAAAGGCTTGTGGAAAAGAGGGACTGGCCTGCTCTTTTTAACAAGGATCAGCTTAAAATGGAAAGGGAAGCAGGTCGTGTATTCAAGGGGTGGAAAGAGGGAAAGATCTACTTTGCACCTACTTATAAATATGCCTTCAACTCAGACACTTACTATGTTGAAGGTGTAAAAGTTTCAAAGAACAAAAGGAGAACTCCAGCTTGGTGCGATAGAATCTTGTGGCATGGAGGGGGAATACAGCAACTTTCGTACGTCCGCAGAGAATTTAAGTTCTCTGACCATCGACCGGTTTGTGCAACATTTAATGTAGAAGTTGAGGTTATGTTCAGGGGACAGAAGAAGAAAGTTTCAACTTGCAACTTTCAGAACATTCATGATCTTGTATCCACAAGAAGTCCATATTATTCTTGA

Predicted protein sequences of Glyma13g25497

Limit To All Plant Sequences

>Glyma13g25497.1   sequence type=predicted peptide   gene model=Glyma13g25497   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMDIEFEDRQEETVSDMIPSNRQRKKQSFLWKVLAMRERNGRTIERSSNDSLDPLSVSSFDNRGSEPSMPSNEAIQNFRVFAATWNVGGQCPTGNLDLSDFLQVRNEPDMYVLGFQEIVPLNAGNVLVLEDNEPAAKWLALINQSLNGSSDLASKGLKPTASFGGPLFSQKPSLKKIKKTFKKLNGKRLRSCNCVLEMERKAGKDFCFRCQESNFNSDDSSTEEEDENFPIPVALATSQMKYSLVTCKQMVGIFVSVWMRRELVQYVGHLRICCISRGIMGCLGNKGCISVSMSFYQTSFCFICSHLASGEKEGDELRRNLDVIEILKNTQFPRICKTPHSRMPDKILDHDRIIWFGDLNYRISLSHDDAKRLVEKRDWPALFNKDQLKMEREAGRVFKGWKEGKIYFAPTYKYAFNSDTYYVEGVKVSKNKRRTPAWCDRILWHGGGIQQLSYVRREFKFSDHRPVCATFNVEVEVMFRGQKKKVSTCNFQNIHDLVSTRSPYYS*

>Glyma13g25497.2   sequence type=predicted peptide   gene model=Glyma13g25497   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMDIEFEDRQEETVSDMIPSNRQRKKQSFLWKVLAMRERNGRTIERSSNDSLDPLSVSSFDNRGSEPSMPSNEAIQNFRVFAATWNVGGQCPTGNLDLSDFLQVRNEPDMYVLGFQEIVPLNAGNVLVLEDNEPAAKWLALINQSLNGSSDLASKGLKPTASFGGPLFSQKPSLKKIKKTFKKLNGKRLRSCNCVLEMERKAGKDFCFRCQESNFNSDDSSTEEEDENFPIPVALATSQMKYSLVTCKQMVGIFVSVWMRRELVQYVGHLRICCISRGIMGCLGNKGCISVSMSFYQTSFCFICSHLASGEKEGDELRRNLDVIEILKNTQFPRICKTPHSRMPDKILDHDRIIWFGDLNYRISLSHDDAKRLVEKRDWPALFNKDQLKMEREAGRVFKGWKEGKIYFAPTYKYAFNSDTYYVEGVKVSKNKRRTPAWCDRILWHGGGIQQLSYVRREFKFSDHRPVCATFNVEVEVMFRGQKKKVSTCNFQNIHDLVSTRSPYYS*

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