Glyma14g38570 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma14g38570

Feature Type:	gene_model
Chromosome:	Gm14
Start:	47699935
stop:	47706202
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g38570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58320	AT	Annotation by Michelle Graham. TAIR10: Kinase interacting (KIP1-like) family protein \| chr5:23577728-23579641 FORWARD LENGTH=558	SoyBase	E_val: 4.00E-142	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005884	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: actin filament	SoyBase	N/A	ISS
PF07765	PFAM	KIP1-like protein	JGI		ISS
UniRef100_B9SD87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RAB6-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9SD87_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B57B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B57B related cluster n=1 Tax=unknown RepID=UPI000233B57B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g38570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g38570

Paralog	Evidence	Comments
Glyma02g40300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g38570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g205100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g38570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g38570

Limit To All Plant Sequences

>Glyma14g38570.1   sequence type=CDS   gene model=Glyma14g38570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTTCTGGGGTTCATTCTTGCAAGCAAATGAGGAGGTTGGAATCGAGGAAGTCTCATTCTTGGTGGTGGGATAGTCACATTAGCCCCAAGAATTCTAAGTGGCTTTTTGAAAACCTTGAAGAGATGGACCGGAGTGTGAAGCGAATGTTGAAGCTGATAGAAGAGGATGCAGATTCATTTGCCAAAAAAGCTGAAATGTATTATCAGAAGAGGCCAGAATTGGTTGCTCTGGTTGAGGAATTTTACCGTGTTTACCGGGCTCTGGCTGAACGTTATGATCATGTCACAGGAGAATTACGGAAGAATATACCCTCTGATCTCCAATCCCAAGGTTCTGGTATTTCAGATGCTGGCTCTGAACCTTCCTCCACTTGGCCCTCTCCAACTCCGAAGAGGGGGCGTCGTTTTAAGTCTGGTACCCGAGCTGCTGGGTTTGAATACTTTCTTGGCACTAGTGGAAATGGTACTGATGTATACCAAAAAGATGGGGATGAGTCCTCTACTTTGACAGATTCTGAGGAGGAATCTGACGATTCATCAGTTAATAATTATTTGGGTTTCTCACGGAATGGTAGTGATCTGGGGATAAACAGAAGAATAATGGAATTGGAAACTGAGCTTCGTGAGGTAAAAGAAAAGCTATGGATGCAGGAAGAAGAACATGTAGATGGATCATCTAGGGGATCAAGAAGTGAGAATACTGAAGATGTTTATACCAAAATTAATGCATATGAACAAGAACTGATGACTGTGAATGAGAAGTTAAGACTTTCAGAAGAAGAAATTACTAAACTGAAGATTGAGCTTGAAAAATACAGACTCTTCAATACAGAAAATTTGGAGGCTGGTTTTGAGTCATCATCAATGAAAGAACACATCAATGAAGGAGGGGAAGCCCTGGAACACAAGACTATAGAGCTTGAGGGAAGCATTGATGGTGTGGATAAGGAATTGTTTGACCAAAATGGTGAGATCGAGACACTTGTGAGGGAGCTAAGAATTACCAAAGAAAATCTCAAAGCTTCAGAAATGCAAATTACTTCACTGAAATTTGAGGCCAATAAATCATCTGAAAGAATTCAGCAGTTGCATGATCAGCTTGAGTTGGCTCGTAAAGACATTTCTACATGGAAAACCAAATTCAATAGTGAGAAAAGAGAGAGCACCAAACTCCATGAAAGACTTGCAAGGTTAAGGACTAGTCTATCAGACCGTGACCATGAGATCAGGGATTTGAAAACAGCAGTATCTGACACCGAGCAGAAAATCTTCCCAGAGAAAGCTCAGTTGAAGTCTGAAATGTCAAAGGTGCTGGACAAACGGACTCATTTAGAGGAACGGATCAGAGAATGGGAAAGTCGAGGCCGTTGTTTTGAAGACGAGATCAGAAGGATCCAGTCCGAAAAAATGGAGACAGAGGAGGCACTTAAGGGTGAGATTCAACTATTAAAGGCAGACATAGAGCAGAGAGAGAGCAACATAAAAGACCTCAACACAATCCTTGATACTTTAAAACTAGAGAAAGATAATCTCCATGTAGAAGTCTATTCACTCAAGGAAGAGGTGAACTCCAGAGATGGTAGGATTGAGCACCTGAACACCCATTTGAACCAACTTCACATGGAACATGTACAACTGATTGCTGGAATGGATGAGGCACAGAAACAAGTGGAAGAACTAAAATCAAAAGCAAAGCAACTTGAGGAAGAGGTCGAGAGGCAAAAAACCGTGATTTTAGAAGGAGAAGAAGAGAAACGCGAGGCCATACGGCAGCTATGTTTCTCACTCGAGCACTATAGAGATGGCTATAATATGCTTCGGCAGCATGTTATGGGACACAAACGGGTTCCAGTTTTGGCTGTCTAA

Predicted protein sequences of Glyma14g38570

Limit To All Plant Sequences

>Glyma14g38570.1   sequence type=predicted peptide   gene model=Glyma14g38570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASGVHSCKQMRRLESRKSHSWWWDSHISPKNSKWLFENLEEMDRSVKRMLKLIEEDADSFAKKAEMYYQKRPELVALVEEFYRVYRALAERYDHVTGELRKNIPSDLQSQGSGISDAGSEPSSTWPSPTPKRGRRFKSGTRAAGFEYFLGTSGNGTDVYQKDGDESSTLTDSEEESDDSSVNNYLGFSRNGSDLGINRRIMELETELREVKEKLWMQEEEHVDGSSRGSRSENTEDVYTKINAYEQELMTVNEKLRLSEEEITKLKIELEKYRLFNTENLEAGFESSSMKEHINEGGEALEHKTIELEGSIDGVDKELFDQNGEIETLVRELRITKENLKASEMQITSLKFEANKSSERIQQLHDQLELARKDISTWKTKFNSEKRESTKLHERLARLRTSLSDRDHEIRDLKTAVSDTEQKIFPEKAQLKSEMSKVLDKRTHLEERIREWESRGRCFEDEIRRIQSEKMETEEALKGEIQLLKADIEQRESNIKDLNTILDTLKLEKDNLHVEVYSLKEEVNSRDGRIEHLNTHLNQLHMEHVQLIAGMDEAQKQVEELKSKAKQLEEEVERQKTVILEGEEEKREAIRQLCFSLEHYRDGYNMLRQHVMGHKRVPVLAV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain