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Report for Sequence Feature Glyma15g11810

Feature Type:gene_model
Chromosome:Gm15
Start:8685899
stop:8693476
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04320AT Annotation by Michelle Graham. TAIR10: malonyl-CoA decarboxylase family protein | chr4:2113565-2116525 FORWARD LENGTH=518 SoyBaseE_val: 0ISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0050080GO-mf Annotation by Michelle Graham. GO Molecular Function: malonyl-CoA decarboxylase activity SoyBaseN/AISS
KOG3018 KOG Malonyl-CoA decarboxylase JGI ISS
PTHR14153Panther MALONYL-COA DECARBOXYLASE JGI ISS
PF05292PFAM Malonyl-CoA decarboxylase (MCD) JGI ISS
UniRef100_B9RXF9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Malonyl-CoA decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RXF9_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233BFFFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BFFF related cluster n=1 Tax=unknown RepID=UPI000233BFFF SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g00960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g111500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g11810.2   sequence type=transcript   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCGCTCGCTCGGACCTCGGAATAAGAACATGGAAACATAAATAGTGGAGGTTGTTGCCAAACAACGATGTAACGCACGATCCAAAAGCAGAAAGCAAAGTTGTTTGACTGATACCAGTTTATTGATTTTGATATCCGAACACACATTCTTTCAGCAAATAAGTACGGAAATATATATGTAAAAAAATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAGCCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGACGAGTCAAATGCAGCAGCAGAATTCCCGCCAAAACGGATCGCCAGGTGATGGAAATTCAGCGCCAAATGACTCCGGCAACTCCGAGAGAGAGTTTAAGCGTGTCCGCGCTTCAATGCACTCTGCCATATCAATGAGCAAAACAGAAGTTCTAGATGACGTGCTTAATAACTTCTCGGAGGGTTATTTAAACCTTTCTCATGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAATATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACATCCTGCTGACAAAGCTCAAGTTAGTGGCTCTGAAGACGAAGGTTTGTTTTCTTCTTTCTATCGCATTGAGAGGAATTTGAGACATGCCCTCCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTCAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTATCTATTCTTGCAGAGGAGAATATTGCATCGCTGAGAGCATTGGATTCTTATTTAATGGAAAAATTTATTACATGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGATCCTGCTTCTTTGCTGGAGAAAATTGTTGCTTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCCGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATATTGCTCAGACTATACAGGAAGTTTTGTGGGATAATCCTCCTATACCTGAAAGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCGGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTTGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTCAGTCCCATCCCGGGATTCATTTCATGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAGGGAGATAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAACCCGAGGAGGAAGAAGCACTTATGAGTTTACCTAAGGATATCGCTGCAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAGGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTACGTGTATAGGTAATCTGTAATTGTCCTCTGAATGTTGTTCTGTTCATACCAAAGTATATTCACAGTTATATTTATGGTGTCAATTTACTCTGTGCCCTTTTGGTCGTTCAGACAAATCTTATTTGCTTAGATGAAGAGTTCCTCTTACCATTTTGGTTCTGGTAGTGAAGTTAGGAAGTCTTACCAATGAAAGGAGCAATAGCTGTACTTGTCATTTCATGCTTTTGTGGTTTACTTGTTATTAATATCTGTATGAATGGACCAGATCAATTTTAAATTTCTCTTCAGTTGATCAAATTTGAAGTATATGCTGCTGATGACACCTAATTACAGGTTGGATCACATAGAAGAATACGCCCAATCATACTTCAACAATGGTGAAATTCATACCTCAAGTGATCTCCATCGCTGGGTTGATGCAACAGATACTGCTTAGTGTCAATTCAAATCTGATAGAAGATAAACCTCAACGTGTTTTCAAAAATATCATATGTGCATGTGGTTTGGAAACAAAGCTCCTTGGCAGCGGACAACCTTGTTACTACTAAGCCCTGCCTTTCTTTGTCTCGACCTCTTTGCTATCACTTGCAGCCATAGAGTGATAAGTGATTGTGAAGTCTGCTTGGTTGGATCGTAATGGAAGGTTTAGTCATAACAATAGGAGTACAGGACAAATGCATCCAAGTCTAAAACAGAGGAAGCATATATCTTTAATTGTTGATGATTTCTGTCCATAGAACAGAAAGCAACTGATTGTGTCACTATCCAAGAATGCCCTATAAATAGGAGGTGCATAGGAGGAAGGTTATAATCAATAGTCCATGCTTGGTAAACCTTAAGCTGTACAATGTAATGTAATATTTGTACTTACAAGACTGACAACAAACACTATCTTATTCTTAGTGAAGAAGGTGCTACTGCTTCTGAAACTGTAAATTATCAAATAGGAAATTGTTCCTTGAACATTGAGGATTGAAGGTAATGCTTGTTGCTTGTTTCATCGTTGGACAATGTTTTCACTTTCAGGTGTAAAGGAAAATTGATTACGCACAAATTGGTCAAAGCTGTCTTCAAAGCCTTGAAACAGCACCACTATAATTCTGGTGCTCCAAGTATCCCAAAAATATCATGGAGGGCATAACAATATATTCTGTTCATCATCAATTTGTAACAAGAACTTGTCCCAACCATTTTATGATCTAACTGTTTTTTTTTTAATCATAACCATGTTAATACTGGAGTATAAAATTGGTCGAAAACCATGTAGACAAGTTCTTTCCTGTACATATAAGTAAGTACATTGCCCTAGCTCCTGTTCGATCAGAGGGAATGAAGGACTATTCACTTCTCGGTTTCAACATGACTGGTTTCTAAGACATATTCCGTCATGAGCCTCGTGTTAGATTCAGTGACCATCTACAAG

>Glyma15g11810.1   sequence type=CDS   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAGCCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGACGAGTCAAATGCAGCAGCAGAATTCCCGCCAAAACGGATCGCCAGGTGATGGAAATTCAGCGCCAAATGACTCCGGCAACTCCGAGAGAGAGTTTAAGCGTGTCCGCGCTTCAATGCACTCTGCCATATCAATGAGCAAAACAGAAGTTCTAGATGACGTGCTTAATAACTTCTCGGAGGGTTATTTAAACCTTTCTCATGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAATATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACATCCTGCTGACAAAGCTCAAGTTAGTGGCTCTGAAGACGAAGGTTTGTTTTCTTCTTTCTATCGCATTGAGAGGAATTTGAGACATGCCCTCCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTCAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTATCTATTCTTGCAGAGGAGAATATTGCATCGCTGAGAGCATTGGATTCTTATTTAATGGAAAAATTTATTACATGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGATCCTGCTTCTTTGCTGGAGAAAATTGTTGCTTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCCGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATATTGCTCAGACTATACAGGAAGTTTTGTGGGATAATCCTCCTATACCTGAAAGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCGGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTTGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTCAGTCCCATCCCGGGATTCATTTCATGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAGGGAGATAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAACCCGAGGAGGAAGAAGCACTTATGAGTTTACCTAAGGATATCGCTGCAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAGGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTACGTGTATAGGTTGGATCACATAGAAGAATACGCCCAATCATACTTCAACAATGGTGAAATTCATACCTCAAGTGATCTCCATCGCTGGGTTGATGCAACAGATACTGCTTAG

>Glyma15g11810.2   sequence type=CDS   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAAAAAGCTTTGTCCATTTTGATGCGCGCCAGAATGAAGCCCAACGATCGTACAAGCCTTTCTCTCTCTCCTATTCCTCTAACAAACGCGACGAGTCAAATGCAGCAGCAGAATTCCCGCCAAAACGGATCGCCAGGTGATGGAAATTCAGCGCCAAATGACTCCGGCAACTCCGAGAGAGAGTTTAAGCGTGTCCGCGCTTCAATGCACTCTGCCATATCAATGAGCAAAACAGAAGTTCTAGATGACGTGCTTAATAACTTCTCGGAGGGTTATTTAAACCTTTCTCATGAAAACCGTCGCAAGTTGCTCCTTGTCCTTGCTAGAGAATATGATCTCAATAGGTCACAAGTGCGTGAACTGATAAAGCAGTACCTTGGACTTGAACATCCTGCTGACAAAGCTCAAGTTAGTGGCTCTGAAGACGAAGGTTTGTTTTCTTCTTTCTATCGCATTGAGAGGAATTTGAGACATGCCCTCCAGCCGGTTTATGAAGTTCTCTTTGAGCGTCTCAACACTCATCCTGGAGGGTTGAGGACCTTATCCATTCTTCGAGAAGATATCCTATCTATTCTTGCAGAGGAGAATATTGCATCGCTGAGAGCATTGGATTCTTATTTAATGGAAAAATTTATTACATGGCTTAGTCCTGCTGCCTTAGAGCTTCACCAGATTACATGGGATGATCCTGCTTCTTTGCTGGAGAAAATTGTTGCTTATGAAGCTGTGCACCCTATTAGCAACCTTCTAGATCTTAAGAGAAGACTGGGAATTGGCCGTCGTTGTTTTGGATATTTACATCCCGCTATTCCTGGTGAACCCCTAATTTTCATTGAAGTTGCACTACTGAAGGATATTGCTCAGACTATACAGGAAGTTTTGTGGGATAATCCTCCTATACCTGAAAGTGAGGCAACATGTGCCTTGTTCTACTCCATATCATCAACTCAGCCTGGCTTAGCGGGGATCAACTTGGGAAAATTTCTCATCAAACGGGTTGTAACACAGGTGAAAAGAGAGATGCCACATATTTCTACCTTTGCAACCCTCAGTCCCATCCCGGGATTCATTTCATGGCTTTTATCCAAGTTAGCATCTCAAAGACTGCTTGCTGAGGGAGATAATTTGTCACAACCACAAGCAGAGGGATCCAGTTCCACTTTCTATGAGAATATACTTAAACCCGAGGAGGAAGAAGCACTTATGAGTTTACCTAAGGATATCGCTGCAGGAGAAAATGGAATGGATGTGATGTTCAACTTGCTTACTTCTACATCCTATAAGTGGATCCATTCACCAGAACTTCTGTCAGCATTAAAATCCCCTTTGATGCGTTTATGTGCCAGGTACCTTCTGCAAGAGAAGAAAAGAGGAAAGGCTTTGGACTCTGTAGCAAATTTTCACTTGCAAAATGGAGCGATGGTTGAAAGAATAAACTGGATGGCAGATCGTTCAGATAAAGGTCTTTCTCAAAGTGGAGGGATCATGGTGAACTACGTGTATAGGTAA

>Glyma15g11810.1   sequence type=predicted peptide   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKALSILMRARMKPNDRTSLSLSPIPLTNATSQMQQQNSRQNGSPGDGNSAPNDSGNSEREFKRVRASMHSAISMSKTEVLDDVLNNFSEGYLNLSHENRRKLLLVLAREYDLNRSQVRELIKQYLGLEHPADKAQVSGSEDEGLFSSFYRIERNLRHALQPVYEVLFERLNTHPGGLRTLSILREDILSILAEENIASLRALDSYLMEKFITWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGIGRRCFGYLHPAIPGEPLIFIEVALLKDIAQTIQEVLWDNPPIPESEATCALFYSISSTQPGLAGINLGKFLIKRVVTQVKREMPHISTFATLSPIPGFISWLLSKLASQRLLAEGDNLSQPQAEGSSSTFYENILKPEEEEALMSLPKDIAAGENGMDVMFNLLTSTSYKWIHSPELLSALKSPLMRLCARYLLQEKKRGKALDSVANFHLQNGAMVERINWMADRSDKGLSQSGGIMVNYVYRLDHIEEYAQSYFNNGEIHTSSDLHRWVDATDTA*

>Glyma15g11810.2   sequence type=predicted peptide   gene model=Glyma15g11810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKKALSILMRARMKPNDRTSLSLSPIPLTNATSQMQQQNSRQNGSPGDGNSAPNDSGNSEREFKRVRASMHSAISMSKTEVLDDVLNNFSEGYLNLSHENRRKLLLVLAREYDLNRSQVRELIKQYLGLEHPADKAQVSGSEDEGLFSSFYRIERNLRHALQPVYEVLFERLNTHPGGLRTLSILREDILSILAEENIASLRALDSYLMEKFITWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGIGRRCFGYLHPAIPGEPLIFIEVALLKDIAQTIQEVLWDNPPIPESEATCALFYSISSTQPGLAGINLGKFLIKRVVTQVKREMPHISTFATLSPIPGFISWLLSKLASQRLLAEGDNLSQPQAEGSSSTFYENILKPEEEEALMSLPKDIAAGENGMDVMFNLLTSTSYKWIHSPELLSALKSPLMRLCARYLLQEKKRGKALDSVANFHLQNGAMVERINWMADRSDKGLSQSGGIMVNYVYR*







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