Glyma16g03770 - SoyBase

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Report for Sequence Feature Glyma16g03770

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3142628
stop:	3147717
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g03770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01580	AT	Annotation by Michelle Graham. TAIR10: ferric reduction oxidase 2 \| chr1:209395-212810 FORWARD LENGTH=725	SoyBase	E_val: 0	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0015688	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron chelate transport	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000293	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferric-chelate reductase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG0039	KOG	Ferric reductase, NADH/NADPH oxidase and related proteins	JGI		ISS
PTHR11972	Panther	NADPH OXIDASE	JGI		ISS
PTHR11972:SF3	Panther	UNCHARACTERIZED	JGI		ISS
PF01794	PFAM	Ferric reductase like transmembrane component	JGI		ISS
PF08022	PFAM	FAD-binding domain	JGI		ISS
PF08030	PFAM	Ferric reductase NAD binding domain	JGI		ISS
UniRef100_F5BSM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ferric reductase n=1 Tax=Lotus japonicus RepID=F5BSM3_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1MKU0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MKU0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g03770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g03770

Paralog	Evidence	Comments
Glyma07g07380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g03770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g033800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g03770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g03770

Limit To All Plant Sequences

>Glyma16g03770.1   sequence type=CDS   gene model=Glyma16g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCAAGAAACAGTGGTGAAAAGGTCACCTTTTCAAGAAAATTGTGGGAGGCTTCAATTTGCAATAAGGCTATTAGTGGTGGTATTGCTTCTAGGTTGGATTTTCATTCGGATAATGTCGCCTACAAATACTTTTAGACAAACATGGCTGCCTCGATACAAAGCAAAGACTAATAATACAACTTATATTGGTTCAAAAGGTGCTTATCTTCTCTTGTACACTTTCCCAATCTTGCTCCTAGCTACTTTGGGATGTGTCTACCTTCACATAGGCAAAAAAGTAATCCATTCCAACACGGAGAGCTGCAATGCAAAGAAGTGTGGGGTAACCATATGGAAGCGTCCAGTGCTTATAAAAGGCCCTCTTGGCATTGTTTCTGGCACAGAGATAGCCTTCTTGTTTTTGTTCATTGCCCTCCTAGCTTGGGTCTTTTCAACTTCTGTACAAAACAGCTTTGCAACAATCACCCCACAATTTGCAGCAAAGGATGGCCAGAAAATATGGGAAGAGAAGCTAGATAGAGTAGCAAAAAGGTTAGGTGTGGTTGGGAACATATGTTTGGCATTCATGTTTTTTCCTGTGGCTCGTGGCTCATCTGTGCTGCCACTGCTTGACCTCACCTCGGAGAGTTGCATCAAGTACCATATTTGGCTTGGAAACATAGCCATGACACTTTTTACTTCTCATGGCCTTTGCTACATCATTCTTTGGGCAGTTACTGATCATACTTCTAATATGCTGGAATGGAAAAAGAATGATATATCAATTGTGGCTGGAGAGATAGCTCTGCTTTCTGGTTTGTTCCTATGGATTGCAACCATTCCCCGCATTAGGCGAAAAGTCTTTGAGCTGTTCTATTACACTCATCACCTCTACATCCTCTTCATAGTCTTCTTCATCTTTCATGTTGGCATTACCTATGCCTGCATTATGCTCCCTGGTTTCTACCTGTACTTGGTTGATCGTTACTTAAGGTTTCTGCAATCAAGGTGCCAAGTTCGTCTGGTTTCTGCGCGGGTTTTGCCATGTGAAGCTGTAGAACTCAACTTCTCTAAGGGCTATGGATTAACTTATAACCCCACAAGTGTTATGTTCATAAATATACCAAGCATATCCAAGTTGCAATGGCATCCATTTACTGTTACTTCTAATAGTAATTGGGAGCGAGACAAGCTAAGTGTTGTTATTAAATGTGAAGGAACTTGGACCAAGAAGCTCTATCAGCTGCTTTCAACATCTTCCACAATAGATCGCCTTGCTGTATCTGTTGAAGGTCCTTATGGACCTGCTTCAACCAATTATCTACGCCATGACACTCTTGTGATGGTAAGTGGAGGAAGTGGCATCACACCTTTTATCTCCATCATTAGGGAGCTAATATATCTGAACACTACATTCAAATGCAAGACCCCAAAAGTTGTCCTAATTTGTGCATTCAGAAACTCTACATCTCTGTCAATGCTAGATATGATCCTCCCAATATCTGGCACCCCATCTGAAATTTCTAATATGGAATTACAAATTGAGGCATACATCACAAGAGACGAGGAGCTTAAAGCAGATTGCCCAATTCACCCTCAAACCATATGGTTCAAGCCAAATCCATCTGATGCACCAGTACATGCTATATTAGGTCCAAACAGTTGGCTCTGGCTTGGTGCTATAATATCATCCTCTTTCATAATTTTCCTTATCTTGATAGGGATAATTACTCGTTACTACATTTTCCCTATTGATCATAACTCAAATGAAATATTTTCATTCCCGTTGAATGCATTCCTTAACATGCTAGTGATATGTGTGTCCATAGCAAGTGCTGCTAGTGCAGCTTTTCTTTGGAACAAGAAACATAATGCCAAAGAAGCAAAACAGGCTCAGAACTTGGAAGGATCAACACCAACAGTGTCACCAAACTCCATGGTTCACAATGCAGATAGAGAATTGGAAAGCCTTCCATATCAGTCCCTTATTCATGCTACTAATGTGCATTATGGTGTAAGACCAGACCTAAGAAGAATGCTACTTGAACACAAAGGTTCAAGTGTGGGTGTTCTTGCTTCAGGACCCAAAATAATGAGGCAGGAGGTTGCAGCCATTTGCTCATCTGGTTTAGCTGCGAATATGCATTTTGAGTCAATTAGCTTTAGCTGGTGA

Predicted protein sequences of Glyma16g03770

Limit To All Plant Sequences

>Glyma16g03770.1   sequence type=predicted peptide   gene model=Glyma16g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQETVVKRSPFQENCGRLQFAIRLLVVVLLLGWIFIRIMSPTNTFRQTWLPRYKAKTNNTTYIGSKGAYLLLYTFPILLLATLGCVYLHIGKKVIHSNTESCNAKKCGVTIWKRPVLIKGPLGIVSGTEIAFLFLFIALLAWVFSTSVQNSFATITPQFAAKDGQKIWEEKLDRVAKRLGVVGNICLAFMFFPVARGSSVLPLLDLTSESCIKYHIWLGNIAMTLFTSHGLCYIILWAVTDHTSNMLEWKKNDISIVAGEIALLSGLFLWIATIPRIRRKVFELFYYTHHLYILFIVFFIFHVGITYACIMLPGFYLYLVDRYLRFLQSRCQVRLVSARVLPCEAVELNFSKGYGLTYNPTSVMFINIPSISKLQWHPFTVTSNSNWERDKLSVVIKCEGTWTKKLYQLLSTSSTIDRLAVSVEGPYGPASTNYLRHDTLVMVSGGSGITPFISIIRELIYLNTTFKCKTPKVVLICAFRNSTSLSMLDMILPISGTPSEISNMELQIEAYITRDEELKADCPIHPQTIWFKPNPSDAPVHAILGPNSWLWLGAIISSSFIIFLILIGIITRYYIFPIDHNSNEIFSFPLNAFLNMLVICVSIASAASAAFLWNKKHNAKEAKQAQNLEGSTPTVSPNSMVHNADRELESLPYQSLIHATNVHYGVRPDLRRMLLEHKGSSVGVLASGPKIMRQEVAAICSSGLAANMHFESISFSW*

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