Glyma17g36350 - SoyBase

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Report for Sequence Feature Glyma17g36350

Feature Type:	gene_model
Chromosome:	Gm17
Start:	40318672
stop:	40322837
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g36350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42690	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF547 \| chr5:17116630-17119492 REVERSE LENGTH=540	SoyBase	E_val: 2.00E-161	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR23054	Panther	UNCHARACTERIZED	JGI		ISS
PF04784	PFAM	Protein of unknown function, DUF547	JGI		ISS
UniRef100_B9R7H5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9R7H5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E7C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E7C4 related cluster n=1 Tax=unknown RepID=UPI000233E7C4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g36350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g36350

Paralog	Evidence	Comments
Glyma14g08820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g36350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g245000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g36350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g36350

Limit To All Plant Sequences

>Glyma17g36350.2   sequence type=CDS   gene model=Glyma17g36350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAGGGAAGCTTGAGAAATGCAAATAAAAGTGGAAAAGCTTCTAGCAGAGAAAGAAAATTGGCTTTGCAACAAGATGTGGATAGGTTGAAGAAGCAGCTTAGGCATGAAGAGAACATTCATAGAGCATTGGAGAGGGCTTTCAACAGACCCTTGGGAGCTTTGCCTCGTCTTCCGCCTTATCTCCCTCCCTATATACTAGCTCTTCTGGCTGAAGTGGCAGTTCTAGAAGAGGAAATTGTTAGGCTTGAAGAGCAGGTTGTGCATTTCAGACAGGATTTGTACCAGGAAGCTGTCTACATGTCATCTTCTATGAGGAAATTGGAAAATTCAGTTTCAGCTCCTCCAAACAAGTCAAATCCAACATTAGATAGTCCCAAGTTGGATAAATTGAAGTCTCTTACCCAAACAGCTGGTAATTCAACAGCAACATCTGAAACTAAGCCTACCACAACACTCACTGAGGATAGACAAGGGAAAGAGAATCAATCATGTACTAATTCTTCCAAGAGCAGGCAGCAATCATCCAATCAAATGAACAAAACTCCAATTAAAAACATTGACAGTCAATCATTGCAGAAAAGGTTGGATCATCCAAAAAGAAAGCAAGAACCAAGGGTGAACAACCAGCAAATTGCAGATGTAAGAAATCATAGTCCACATAAAAATTCACCAGAAGCTCAGAGTCCAAATATAATTTCAGAAAATATTCTGAAGTGCTTATCAAACATTCTCTTGAGAATGAGTGCCGTGAAGAATCCAGGTTCTACATGTGACATGGCACCCTTGTGGGATCTAAAGCCTCAAAACTGTGATGAAGAAGCAGATTTTTGGGATCCATATGGCATCTGTTTGGAATTTGGGAAGAGGGATATTGGTCCATACAGGCAATTATGTGCAATTGATGCCAAATCTTTCAATCCAAAACGAACTGCAAATACTTTATTTTTACTACATCGGTTGAAACTACTTTTTAGGAAAGTAGCCTCTGTCAACTTGGAAAACCTCAACCATCAGGAGAAGCTTGCATTCTGGATCAACATCTACAATTCGTGTATGATGAATGCATTCATAGAGAATGGCATACCAGAGAATCCTCAAATGGCTGTTGCACTAATGCGGAAGGCAACAATAAATGTTGGTGGGCACGTGCTAAGTGCAACAACCATAGAGCATTTCATTTTAAGACTTCCTTATCACTGGAAATTTACGTTTTCCAAGGGAACAAAAAATCATCAAATGACAGCAAGAAGCATATATGGACTGGAACTGTCAGAACCCCTTGTGACATTTGCTCTCTCTTCTGGAACTTGGTCCTCTCCTGCTGTGAGAGTTTACACAGCATCCCAGGTTGAGAATGAACTAGAAGTGGCCAAAAGAGAGTACTTACAGGCAGCAATTGGATTTTCAACTTCAAAGTTTGCTATCCCAAAGCTGCTGGATTGGTATTTGCTGAACTTTGCAAAAGACTTGGAATCATTGCTGGATTGGATCTGTCTCCAGTTACCAAGTGAACTGGGGAAAGAAGCCATTAAATTCCTTGAGGAAAGAAAAACCGAGCCCTTATCACAATTTGTACAAATTATGCCATATGAGTTCAGCTTTAGATACTTGATATGCACATAA

Predicted protein sequences of Glyma17g36350

Limit To All Plant Sequences

>Glyma17g36350.2   sequence type=predicted peptide   gene model=Glyma17g36350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQGSLRNANKSGKASSRERKLALQQDVDRLKKQLRHEENIHRALERAFNRPLGALPRLPPYLPPYILALLAEVAVLEEEIVRLEEQVVHFRQDLYQEAVYMSSSMRKLENSVSAPPNKSNPTLDSPKLDKLKSLTQTAGNSTATSETKPTTTLTEDRQGKENQSCTNSSKSRQQSSNQMNKTPIKNIDSQSLQKRLDHPKRKQEPRVNNQQIADVRNHSPHKNSPEAQSPNIISENILKCLSNILLRMSAVKNPGSTCDMAPLWDLKPQNCDEEADFWDPYGICLEFGKRDIGPYRQLCAIDAKSFNPKRTANTLFLLHRLKLLFRKVASVNLENLNHQEKLAFWINIYNSCMMNAFIENGIPENPQMAVALMRKATINVGGHVLSATTIEHFILRLPYHWKFTFSKGTKNHQMTARSIYGLELSEPLVTFALSSGTWSSPAVRVYTASQVENELEVAKREYLQAAIGFSTSKFAIPKLLDWYLLNFAKDLESLLDWICLQLPSELGKEAIKFLEERKTEPLSQFVQIMPYEFSFRYLICT*

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