Report for Sequence Feature Glyma18g01360
Feature Type: gene_model
Chromosome: Gm18
Start: 710270
stop: 715569
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g01360
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G13450 AT
Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr1:4612999-4615115 REVERSE LENGTH=406
SoyBase E_val: 0 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0048193 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0042802 GO-mf
Annotation by Michelle Graham. GO Molecular Function: identical protein binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
KOG4282
KOG
Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
JGI ISS
UniRef100_A9UHK7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GT-1 n=1 Tax=Glycine max RepID=A9UHK7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_A9UHK7 UniRef
Annotation by Michelle Graham. Best UniRef hit: GT-1 n=1 Tax=Glycine max RepID=A9UHK7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g01360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g01360
Paralog Evidence Comments
Glyma11g37390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g01360 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g010000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g01360
Coding sequences of Glyma18g01360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g01360.1 sequence type=CDS gene model=Glyma18g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTATTTATCGGAGAAGCCTCGCCCCATCGATTTCTACAAGGAGGAAGGCGCGCGTGACATGATGATCGAGGTCGTCTCCAACGGCGACCTCCCTCCTCCGCCTCCTCCGCCGCCTCCGCCGATGATCCTCGGCGAGAGCAGCGGCGAGGACCCCGAGGTCGAGATAAAGGCCCCGAAGAAGCGCGCCGAAACCTGGGTTCAGGACGAGACGCGCTCCCTCATTGGCCTTCGCCGCGAGATGGACTCGCTCTTCAACACCTCCAAGTCCAACAAGCACCTGTGGGAGCAGATATCGGCGAAGATGAGGGAGAAGGGTTTCGACCGTTCTCCCACCATGTGCACCGATAAGTGGCGCAATCTCTTGAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGAGGGAGTGGCTCCGCGAAGATGTCGTATTACAAGGAGATTGACGAGATCCTCAGAGAGAGGAGCAAGAATGTGCAGTATAAGAGCCCTACTCCTCCGCCCAAGGTTGATTCCTTTATGCAGTTTGCTGATAAAGGTATTGATGATACCAGCATCTCTTTTGGGCCTGTTGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAGACTCCTGGAAATGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCGGTTAAATGGGGTGATTATACAAGGCGAATAGGTATTGATGGCACCCCAGAAGCCATTAAAGAAGCAATTAGGGCTGCTTTTAGGTTGAGAACTAAACGTACATTTTGGTTGGAGGATGAAGATCAGATTATCAGAAGTATCGACCGTGAAATGCCTTTAGGAAATTACACTCTTCACATTGATGAAGGAATGGCCATTAAATTACCCCTCTATGATGAGCCTGACCATATACCTGTGCATACTGAAGATAAGATATTTTACACTGAAGACGATTTCCGTGATTTTCTGACCCGCCGGGGTTGGATATGTTTAAGAGAATTTGACAGCTATAGAAATATTGACAATATGGATGATCTTCGACCCGGTGCCATATATCGTGGTGTGAGTTGA
Predicted protein sequences of Glyma18g01360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g01360.1 sequence type=predicted peptide gene model=Glyma18g01360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYLSEKPRPIDFYKEEGARDMMIEVVSNGDLPPPPPPPPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIDEILRERSKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETPGNGGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPLGNYTLHIDEGMAIKLPLYDEPDHIPVHTEDKIFYTEDDFRDFLTRRGWICLREFDSYRNIDNMDDLRPGAIYRGVS*