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Report for Sequence Feature Glyma18g01510

Feature Type:gene_model
Chromosome:Gm18
Start:817957
stop:821165
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67730AT Annotation by Michelle Graham. TAIR10: beta-ketoacyl reductase 1 | chr1:25391676-25393365 FORWARD LENGTH=318 SoyBaseE_val: 9.00E-164ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0042335GO-bp Annotation by Michelle Graham. GO Biological Process: cuticle development SoyBaseN/AISS
GO:0042761GO-bp Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process SoyBaseN/AISS
GO:0046520GO-bp Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0018454GO-mf Annotation by Michelle Graham. GO Molecular Function: acetoacetyl-CoA reductase activity SoyBaseN/AISS
GO:0045703GO-mf Annotation by Michelle Graham. GO Molecular Function: ketoreductase activity SoyBaseN/AISS
KOG1014 KOG 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 JGI ISS
PTHR24316Panther FAMILY NOT NAMED JGI ISS
PTHR24316:SF38Panther SUBFAMILY NOT NAMED JGI ISS
PF00106PFAM short chain dehydrogenase JGI ISS
UniRef100_C6TME1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TME1_SOYBN SoyBaseE_val: 0ISS
UniRef100_G7J2K6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Short-chain dehydrogenase/reductase n=1 Tax=Medicago truncatula RepID=G7J2K6_MEDTR SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g37560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g011600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g01510.1   sequence type=CDS   gene model=Glyma18g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGCTGCATAATCGCCAGGCTCAAGACCCAACCTTTATGGTTCGCGCTGCTCTTCGTTGTCGGATTGTTAACGATTCTCAAATTGGCTTTCGTTGTTTTCAGATGGGTCTACGTCAATTTCCTCCGACCACCGAAGAATCTCAAAAAGTACGGATCTTGGGCAGTGGTTACTGGACCCACTGACGGCATTGGAAAGAGCTTCGCTTTCGAGCTCGCTCGCAAGGGCCTGAACCTCGTCCTTGTCGGAAGGAACCCCGACAAGCTCAAAGACGTGTCGGATTCGATCGCGGCGAAGTTCAGAAGAACCGAGGTTAAGACCGTCGTGGTTGACTTCTCCGGGGATCTGGACGAGGGCGTGAAGAAGATTAGCGAAGCGATTGAAGGGTTGGAAGTTGGAGTGCTCGTTAACAATGTGGGAGTTTCGTATCCTTACGCGAGGTTCTTCCACGAAGTGGACGAGGGGCTTCTCAACAACCTTATTAAGGTTAACGTTGTTGGAACCACTAAGGTCACGCAAGCTGTTCTGCCAGGGATGCTCAGGAGAAAGAAGGGGGCGATTGTTAACATTGGTTCTGGAGCTGCTATTGTTATTCCTTCTGATCCTCTTTATGCTGTTTATGCCGCCACCAAAGCGTACATCGACCAGTTTTCGAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGACGTTCAGTGTCAGATTCCATTATATGTGGCAACCAAGATGGCATCAATCAGGAAATCTTCATTCTTTGTTCCATCAACAGATGGCTATGCCAAAGCAGGTGTGAAATGGATAGGCTATGAGCCTCGTTGCACACCATACTGGCCGCATACTCTTCTTTGGGCTGTGGCATTCTCATTGCCCGAGTTTGTTGTTGATGCTTGGCGCCTGTGGTTTTGCTTGGGTATTCGAAAGAGGGGACAGCGCAAAGAGTCCATGAAGAAGGAATAA

>Glyma18g01510.1   sequence type=predicted peptide   gene model=Glyma18g01510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECCIIARLKTQPLWFALLFVVGLLTILKLAFVVFRWVYVNFLRPPKNLKKYGSWAVVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSIAAKFRRTEVKTVVVDFSGDLDEGVKKISEAIEGLEVGVLVNNVGVSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQAVLPGMLRRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQIPLYVATKMASIRKSSFFVPSTDGYAKAGVKWIGYEPRCTPYWPHTLLWAVAFSLPEFVVDAWRLWFCLGIRKRGQRKESMKKE*







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