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Report for Sequence Feature Glyma18g02140

Feature Type:gene_model
Chromosome:Gm18
Start:1284412
stop:1287585
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G65170AT Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr5:26041218-26042306 FORWARD LENGTH=362 SoyBaseE_val: 1.00E-22ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05678PFAM VQ motif JGI ISS
UniRef100_I1MYT0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYT0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q6AVF5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q6AVF5_ORYSJ SoyBaseE_val: 4.00E-08ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g38180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g017800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g02140.1   sequence type=CDS   gene model=Glyma18g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGGGCAACAGTGGGAGTATGCAATCTTCCAGCACCGCCGGTGATGAAGAGTACGACTCACGCGCCGACCCATCATCGTCTTCATCAATCTCTGCGTTCTTTATTAACAGTAACCCCCACCCTCCACCACAACAAACAACGTTAGCAACTCACGTTGTTGGTCCTCCTTTCTCTTCTCAGCACCACGTGTTCGACCCTTTATCCAATTACTTGGATCCGACACAAAGACCGCCGCAATCAAACCAAATCCTCAACCTGGACATGGTGTGGTCCAAGGTTGCCGCCAGATCCGACCCCGGTCTTAGTTCCTTCGTACCTTCATCTTCCCCACACAACAACAACAACAACAACCAAGCTTTTCTGTTAACTCAATTGGGAGGAGCAGGAGGTCAAAGTCAACCACGCGGAGGAGGAGTTAACAACGTTGCTGTTTTTCCCAGTACCACTCTCCCTCTAGAAAGTGGAGGAGGATTACCAGTGAATGAACAAGTAAACAGTAGCAGCACCAACACGGTGGTTCGAAACCCGAAGAAAAGGTCAAGAGCATCTAGGCGTGCACCCACCACTGTTCTCACTACGGACACCACAAATTTCCGAGCCATGGTTCAGGAATTCACTGGCATCCCAGCACCTCCTTTCACTTCCTCCTCCTCCTCCTCTTTCCCCAGAACCAGGTTAGATCTCTTTGCCTCTTCTAATTCTATTGCTTCTTCTTCTTCTTCTTCCATTATTAGAGAGCAAACACAAACACCTCCTTATCTTCTTCGCCCCTTTGCACACAAAGTTCAAGCTCAACTTCCTTCTTCAATCCCACCACCCTCTTCCTTTCCACCCATGTTGAACAACTACCAGCAGCACTCTCTCAACATGCAGCAAAACCCAATTCTCAGCTTCCAATCCATTCTCCAACCACAACCACTCATTGGTTCCAAAACTCAACAACCCTCATTGGAAATACCGCCTAGTGCTGTTGATTCTTCACACCTCAAGATGGGTGGGTTGGAAGAGTTAGGATTGAGCAATGCGCACGATGGTGGTCATCATCAAAACTTTAACATGGTTTCGTCTTCATCGGATGGAGCATTGTCAAGGGTAACCAACAGCAACATGCGTGGTGGTCCTTCTTCGGCAGACTGGGCCCTGTCCCAGGCCCAAAGAATTGACAACAATGATGGAGGAGTTTTGAGGTCTCTCGGTGGTGCCACTGCGACGTTAAACTACAGAAGCAATGTTTCGGATCCGCGAGTAAAGGTTACTAATAATAATTCGGATTTTCATGGAGACAAAGGACCGGAATGTGCTGTGGCCGCACGAAGCGAAGGTATGGTCGAATCCTGGATTAATTGTTCTTCTGATTAA

>Glyma18g02140.1   sequence type=predicted peptide   gene model=Glyma18g02140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSGNSGSMQSSSTAGDEEYDSRADPSSSSSISAFFINSNPHPPPQQTTLATHVVGPPFSSQHHVFDPLSNYLDPTQRPPQSNQILNLDMVWSKVAARSDPGLSSFVPSSSPHNNNNNNQAFLLTQLGGAGGQSQPRGGGVNNVAVFPSTTLPLESGGGLPVNEQVNSSSTNTVVRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTSSSSSSFPRTRLDLFASSNSIASSSSSSIIREQTQTPPYLLRPFAHKVQAQLPSSIPPPSSFPPMLNNYQQHSLNMQQNPILSFQSILQPQPLIGSKTQQPSLEIPPSAVDSSHLKMGGLEELGLSNAHDGGHHQNFNMVSSSSDGALSRVTNSNMRGGPSSADWALSQAQRIDNNDGGVLRSLGGATATLNYRSNVSDPRVKVTNNNSDFHGDKGPECAVAARSEGMVESWINCSSD*







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