Glyma18g02700 - SoyBase

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Report for Sequence Feature Glyma18g02700

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1729353
stop:	1733055
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g02700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13620	AT	Annotation by Michelle Graham. TAIR10: cation/hydrogen exchanger 15 \| chr2:5678006-5680621 FORWARD LENGTH=821	SoyBase	E_val: 2.00E-132	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006885	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of pH	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005451	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation transport	SoyBase	N/A	ISS
GO:0015299	GO-mf	Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity	SoyBase	N/A	ISS
GO:0015385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity	SoyBase	N/A	ISS
KOG1650	KOG	Predicted K+/H+-antiporter	JGI		ISS
PF00999	PFAM	Sodium/hydrogen exchanger family	JGI		ISS
UniRef100_G7J2D9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: K(+)/H(+) antiporter n=1 Tax=Medicago truncatula RepID=G7J2D9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E2CE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E2CE related cluster n=1 Tax=unknown RepID=UPI000233E2CE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g02700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g02700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g023700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g02700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g02700

Limit To All Plant Sequences

>Glyma18g02700.1   sequence type=CDS   gene model=Glyma18g02700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGTTTGTCTCAAGAATGATAGAACTGTAGGCTCTTTAGGCGTGTGGATGGGTGATAATCCATTCGATTTTGTGGTTCCTGTCACATTGTTCCAAATCATTTTAGTCAGTTTACTCTCTAAAGCCCTTCATTATGTCCTCAGGCCTATCAATACACCCAAATTCATCTGCTGCGTCATCGCTGGCATTCTGTTGGGGCCAACATTCTTAGGGCGCCATGAAGAAATATTGGGAGCCCTCTTTCCGGTAAGACAATCCCTGTTTCTAAATACGTTGTCCAAAATAGGCACTACATATTGCGTGTTCCTCACTTGTTTGAAAATGGACGTGGTGACAACATTAAAATCAGCGAAACGTTGTTGGCGATTCGGTGTGTTTCCCTTCTTGGCTTCTTTCTTGGTCACTGTAACCTTGTTTTCTTTGTATTCTCCCAACGGTAATGCTAATCAAAACCAAATGTCAATCTACCACTTCCCGAACATCTTCACCTTGAGCAGTTTCGCTGTTGTATCCGAAACCTTGATGGAACTCAACCTTGTAGCCACAGAACTTGGCCAAATTGCTCTATCTTCAGCCATGATCAGTGAAATATTGCAATGGACTACGATGGAACTCCTGTTCAACTCAAAATTCAGCATGCGATTTCTAATCGTGCTTTTGATAGGTGCAACTGGATTTGCTGTTTTATTACTTCTTATTATACGACCACTAGTGAACATTGTTTTGGAGAGAACACCACCTGGGAAGCCAATTAAAGAAGCATACGTTGTCTTGTTACTTCTGGGGCCTTTGGTTATGGCAGCTATTAGTGACACATTCGGCATATATTTCGTCATGGGACCTTTTCTCTATGGTTTGGTTCTGCCAAATGGACCCCCCCTCGCCACAACAATCATAGAGAGAAGTGAATTGATCGTGTATGAGTTTTTTATGCCTTTCTTCTTCTTGTTGATTGGCACAAGGACAGACTTGACCTTAATTCATGAGCATTGGGAGGTGGTTCTAGTAGTTCTGGCTATCTTGTTTGTGGGATGCTTGGTGAAGGTACTTGCATGTGCGCTCATTTCTCCCACCTATAATATTAAGCCCAAACATGGCGTCGTGCTTGGGCTCATATTGAATGTCAAGGGTATAGTCGAACTCATCTTTTACGGTAGAATGAATAAACTCAGGGTTATTGATACAGAAGTATTCAGTGTAGCGGTGATGTCTGTGGTGGTCATGACATCAATTTGCATACCCTTGATCAAATCCTTGTACAGGCACCGTAGGGTGTGTAAGACGCAAACCATACAAGAAGGGTGTGTGAAAACAATCCAAAACATAACCGAAAATACACCGTTCAACATCGTATCATGTGTGCACACAGACGAACACGTGCACAACATGATTGCCCTAATAGAAGCATGCAACCCTACCACACAAAGCCCCTTGTACGTCTACGTGGTCCATCTCATTGAGCTCGTTGGAAAAAGCACACCCATTCTTCTTCCCATGAACAAAAACAAGCGAAAATCTTTGTCCGTAAACTACCCCAACACCAACCACATTTTACGTGCCTTTGAGAACTACTCCAACAACTCAAGTGGTCCTGTAACGGTTCTTTCGTATGTTAACGTGGCTCCGTACAGAAGCATGCATGAGGCAGTTTGTAACCTAGCCGAAGATAACTCAGTGCATCTTCTCATTATACCCTTTCACCAAAATGATCAAACCCTAGGAAGCCACCTGGCCAGCACCATTCGCAACCTCAACACAAATTTTCTCGCTAATGCAAAGGGTACTTTGGGGATACTAGTGGATAGATACTCGGTGCTAAGTGGGAGTAGCTCCAAGTTGTCTTTTGATGTTGGTATCTTCTTCATTGGTGGAAAAGATGATAGAGAAGCATTGGCGTTGGGGATTCGAATGTTGGAACGCCCCAACACACGTGTCACCTTGTTCCGGTTTGTTTTGCCTACCAATGAAGATTCGAGGTTTAATGGACTTGTAGAAAATGAAGATGAGAATTTAGAGAGCACGTTGGACGAGAGTCTAATAGATGAGTTTATTGCCAAGAATGATATTAGTAGTGATAGTGTTAACGTTGTTTACCATGAGGCTGTGGTGGAAGATTGCATACAAGTGTTGAAAGCGATTCGGGGAATGGAGAAGGACTATGACCTAGTGATGGTGGGAAAACGACATAGCATGGGGAATTTTGTAGAAGAAGAAATGTCAAATTTCATGGACAATGCAGATCAGTTGGGAATTTTGGGGGATATGTTGGCTTCCAATGAGTTTTGTAATGGGAAAGTTCCCGTATTGGTGATGCAATGCGGTGATGAGAAGAGGGGATTCGAAAGGCCTTAA

Predicted protein sequences of Glyma18g02700

Limit To All Plant Sequences

>Glyma18g02700.1   sequence type=predicted peptide   gene model=Glyma18g02700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVCLKNDRTVGSLGVWMGDNPFDFVVPVTLFQIILVSLLSKALHYVLRPINTPKFICCVIAGILLGPTFLGRHEEILGALFPVRQSLFLNTLSKIGTTYCVFLTCLKMDVVTTLKSAKRCWRFGVFPFLASFLVTVTLFSLYSPNGNANQNQMSIYHFPNIFTLSSFAVVSETLMELNLVATELGQIALSSAMISEILQWTTMELLFNSKFSMRFLIVLLIGATGFAVLLLLIIRPLVNIVLERTPPGKPIKEAYVVLLLLGPLVMAAISDTFGIYFVMGPFLYGLVLPNGPPLATTIIERSELIVYEFFMPFFFLLIGTRTDLTLIHEHWEVVLVVLAILFVGCLVKVLACALISPTYNIKPKHGVVLGLILNVKGIVELIFYGRMNKLRVIDTEVFSVAVMSVVVMTSICIPLIKSLYRHRRVCKTQTIQEGCVKTIQNITENTPFNIVSCVHTDEHVHNMIALIEACNPTTQSPLYVYVVHLIELVGKSTPILLPMNKNKRKSLSVNYPNTNHILRAFENYSNNSSGPVTVLSYVNVAPYRSMHEAVCNLAEDNSVHLLIIPFHQNDQTLGSHLASTIRNLNTNFLANAKGTLGILVDRYSVLSGSSSKLSFDVGIFFIGGKDDREALALGIRMLERPNTRVTLFRFVLPTNEDSRFNGLVENEDENLESTLDESLIDEFIAKNDISSDSVNVVYHEAVVEDCIQVLKAIRGMEKDYDLVMVGKRHSMGNFVEEEMSNFMDNADQLGILGDMLASNEFCNGKVPVLVMQCGDEKRGFERP*

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