Glyma18g02800 - SoyBase

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Report for Sequence Feature Glyma18g02800

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1821278
stop:	1824534
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g02800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40300	AT	Annotation by Michelle Graham. TAIR10: ferritin 4 \| chr2:16831501-16833214 REVERSE LENGTH=259	SoyBase	E_val: 6.00E-126	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0006879	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular iron ion homeostasis	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010039	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to iron ion	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0008199	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferric iron binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0046914	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transition metal ion binding	SoyBase	N/A	ISS
KOG2332	KOG	Ferritin	JGI		ISS
PTHR11431	Panther	FERRITIN	JGI		ISS
PTHR11431:SF8	Panther	FERRITIN LIGHT CHAIN	JGI		ISS
PF00210	PFAM	Ferritin-like domain	JGI		ISS
UniRef100_I1MYZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ferritin n=1 Tax=Glycine max RepID=I1MYZ8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MYZ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ferritin n=1 Tax=Glycine max RepID=I1MYZ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g02800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g02800

Paralog	Evidence	Comments
Glyma11g35610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g02800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g024600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g02800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g02800

Limit To All Plant Sequences

>Glyma18g02800.2   sequence type=transcript   gene model=Glyma18g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAACAAATAAACGTGTGGTGTGACAATTCATTGAAATATAGAGACCCCAAAAAAATAAAGAAGAAAAAAACCGTAGCCATGAAAATGATGAAAGAAACAAGTAGCAGTATAAACCAATTGGAGTTGGAGAGAAAAGAAGAAGAATCTAGAAAGCTGAAATGAATAGGATTCACAGCAGATATAGCAAAGCTCACACTAACATCAATTTATGATAACAACCTCAAAATCAAGTTATCAGTGTGTCACCCTGACTTTTCAAAAACAATTATTTGTTGCTTCATATTTCACTGTGATTTCATAATAGATTTTCACTCATCTTACTTGACTCCAAGCATTCTATATATCTAGTGCCTCCACGCATCTCTACCCTCAAATCTTCACCACACAACACTACCTCAATTACTCAACTAAAGCTTCATTCATTCATCGTGTCGTGTTGTGTTCTTTGCAACCATGCTTCTTAGAACAGCGTCCTCTTTCTCTCTCTTCAACGCCAACGGCGACCATATACTACTCCCTTCCTCTGTTCGCTACTCTCAGGGCAAACACTTGGTTCCATGCGCTACCAAGAACTCCAATAACCGGCCCTTAACCGGCGTCGTATTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACTGTCCCACAAGCTTCCCTTGCTCGCCAGAAGTACACCGATGAGTCTGAGGCTACTATCAACGAACAGATCAATGTGGAGTACAATGTTTCGTACGTTTATCATGCGATGTTTGCCTACTTCGATAGGGACAATGTTGCGCTCAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGCGAGGAGGAAAGGGAGCATGCTGAGAAATTGATGGAATATCAGAACAAGCGAGGTGGAAAGGTGAAGTTACAATCTATAGTGATGCCTCTTACTGAGTTTGACCATGAGGAAAAGGGAGATGCGCTATATGCAATGGAACTTGCCCTGTCGTTGGAGAAGCTGACAAATGAAAAGCTGCTTAACTTGCACAGTGTAAGATATCAAGATTGTTTGGTCCTAGTTTTGGATTCATAGCATGTTTGGATTTGATTCAATTTTGTCATAATCAATTCCAAAACCACGTTGAAAGCTAAAACAACAAATGGTTACTTCCACTTTTTCAAATTTTCACCATGATTTTAGGTCTTAGAATCAGCCATAGTAGCTATCCAAACCTGCATGACATTTGTCTCATTTATGTTCACTTTGATGTTTTTAAAGTGGCAATCCATATATTTGAACATGTTGGATGTTGTTTGACAGGTTGCCTCAAAGAACAATGATGTGCAATTGGCAGATTTTATTGAAAGCGAGTTTTTGGGTGAACAGGTAATGTGACGTTGCAATTTATTAAACTTTCTTATGGGTTACTGGCAGAATGGTTTGCACATGATTATATGCAAAGCACTGCAAGGAAGCTTTTGTCGATCTAAAACTCAGCACTTTTTTTTAATTATTATTTGGGTAGGTGGAAGCCATAAAAAAAATCTCTGAATACGTTGCTCAACTCAGAAGAGTTGGCAAAGGACATGGTGTGTGGCACTTTGATCAGATGCTACTCCATGAGGAAGGAGTTGCTGCTTGATTAACATTTTTTTTCTACCTCTCGTTCGTGCATCTAGTTAGTTATTCGGATTAGTATTTTCAGGTCTTTTAATGCTAGAGATGAACAAAGTGGATATGGAGTAATATTGGTCATTTGTATGTCGTGTTTTTTTTAGTAATATTGGAGTAATATGGAATTTGCGTATTGGACTAATATGGAATTGACGTATTGTTGGAGTAATATGGAATTGAAACTCAAATTACAATTATATTTTTGTTCCTTAATTATTTGCATAACTTAAACATCAAGATTATAATT

Coding sequences of Glyma18g02800

Limit To All Plant Sequences

>Glyma18g02800.1   sequence type=CDS   gene model=Glyma18g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTTAGAACAGCGTCCTCTTTCTCTCTCTTCAACGCCAACGGCGACCATATACTACTCCCTTCCTCTGTTCGCTACTCTCAGGGCAAACACTTGGTTCCATGCGCTACCAAGAACTCCAATAACCGGCCCTTAACCGGCGTCGTATTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACTGTCCCACAAGCTTCCCTTGCTCGCCAGAAGTACACCGATGAGTCTGAGGCTACTATCAACGAACAGATCAATGTGGAGTACAATGTTTCGTACGTTTATCATGCGATGTTTGCCTACTTCGATAGGGACAATGTTGCGCTCAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGCGAGGAGGAAAGGGAGCATGCTGAGAAATTGATGGAATATCAGAACAAGCGAGGTGGAAAGGTGAAGTTACAATCTATAGTGATGCCTCTTACTGAGTTTGACCATGAGGAAAAGGGAGATGCGCTATATGCAATGGAACTTGCCCTGTCGTTGGAGAAGCTGACAAATGAAAAGCTGCTTAACTTGCACAGTGTTGCCTCAAAGAACAATGATGTGCAATTGGCAGATTTTATTGAAAGCGAGTTTTTGGGTGAACAGGTGGAAGCCATAAAAAAAATCTCTGAATACGTTGCTCAACTCAGAAGAGTTGGCAAAGGACATGGTGTGTGGCACTTTGATCAGATGCTACTCCATGAGGAAGGAGTTGCTGCTTGA

>Glyma18g02800.2   sequence type=CDS   gene model=Glyma18g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTTAGAACAGCGTCCTCTTTCTCTCTCTTCAACGCCAACGGCGACCATATACTACTCCCTTCCTCTGTTCGCTACTCTCAGGGCAAACACTTGGTTCCATGCGCTACCAAGAACTCCAATAACCGGCCCTTAACCGGCGTCGTATTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACTGTCCCACAAGCTTCCCTTGCTCGCCAGAAGTACACCGATGAGTCTGAGGCTACTATCAACGAACAGATCAATGTGGAGTACAATGTTTCGTACGTTTATCATGCGATGTTTGCCTACTTCGATAGGGACAATGTTGCGCTCAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGCGAGGAGGAAAGGGAGCATGCTGAGAAATTGATGGAATATCAGAACAAGCGAGGTGGAAAGGTGAAGTTACAATCTATAGTGATGCCTCTTACTGAGTTTGACCATGAGGAAAAGGGAGATGCGCTATATGCAATGGAACTTGCCCTGTCGTTGGAGAAGCTGACAAATGAAAAGCTGCTTAACTTGCACAGTGTAAGATATCAAGATTGTTTGGTCCTAGTTTTGGATTCATAG

Predicted protein sequences of Glyma18g02800

Limit To All Plant Sequences

>Glyma18g02800.1   sequence type=predicted peptide   gene model=Glyma18g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLRTASSFSLFNANGDHILLPSSVRYSQGKHLVPCATKNSNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDESEATINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLTEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVAA*

>Glyma18g02800.2   sequence type=predicted peptide   gene model=Glyma18g02800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLRTASSFSLFNANGDHILLPSSVRYSQGKHLVPCATKNSNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDESEATINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLTEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVRYQDCLVLVLDS*

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