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Report for Sequence Feature Glyma18g03240

Feature Type:gene_model
Chromosome:Gm18
Start:2154159
stop:2159546
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05700AT Annotation by Michelle Graham. TAIR10: arginine-tRNA protein transferase 1 | chr5:1712950-1715639 REVERSE LENGTH=632 SoyBaseE_val: 0ISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0016598GO-bp Annotation by Michelle Graham. GO Biological Process: protein arginylation SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0050994GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of lipid catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004057GO-mf Annotation by Michelle Graham. GO Molecular Function: arginyltransferase activity SoyBaseN/AISS
KOG1193 KOG Arginyl-tRNA-protein transferase JGI ISS
PTHR21367Panther ARGININE-TRNA-PROTEIN TRANSFERASE 1 JGI ISS
PF04376PFAM Arginine-tRNA-protein transferase, N terminus JGI ISS
PF04377PFAM Arginine-tRNA-protein transferase, C terminus JGI ISS
UniRef100_I1MZ35UniRef Annotation by Michelle Graham. Most informative UniRef hit: Arginyl-tRNA--protein transferase 1 n=1 Tax=Glycine max RepID=I1MZ35_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233E57FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E57F related cluster n=1 Tax=unknown RepID=UPI000233E57F SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g35100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g028600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g03240.1   sequence type=CDS   gene model=Glyma18g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTAGCAGCAGCAACACTCCGAAGGAAAGCGTTGTTGTCGACTGCGGAAGGCGTCGAACCTCTTGCGGCTATTGCAGATCCTCTCGTCACAATAGCATCTCTCATGGCATGTGGGCACATAGCCTTACTGTGGATGACTACCAAGATCTTCTTGATCGTGGCTGGAGAAGGTCTGGATGTTTTCTTTATAAACCAGAGATGGAAAGGACATGCTGCCCTTCTTATACAATTCGCTTGAAAGCAAGTGACTTTGTTCCTTCTAAGGAGCAACTTCGTGTATCTAGACGAATGCAAAGGTTTTTAGATGGAACCTTGGATGTAAAAAAAGTTGATGTTATGGAGGACCCAACCAAATCGGGAATCTTCACTAGACCTATGTCAGAAGAATCCTTAGCTGCTGGCAGTGAAAACAAGGATGAAGTTGAAAAATCTTTGCATTATTTATCAAACCAAATTGATAATGTTATACACATCCTCATTGAGAAGGGGGAATTTCCCTCTGGTATTCAATTACCAAATGCTTCAGTAAAAAGAGTTTCACAGGGAAAAAGAAAGTTACTAGTCAATGGATCAGAAGATCTCTTATATAGTAGCAATATAGCCTTTCAAATTGCAGCATCTATAAAACGAGCACAATCATGTGACAAGGTTGTCGATGATTCCAAACCAGCAAGAGTCTGTGAAAAGGAGAATGATTCATCTCCTAAAATTATTGCAGAAAAGCTAGTAGCTTCTTTAGATCCAACTGTGAAAAATTCTGATTTGTCTATCAGGGCTTGCAATGGACATATCAATTTTTATGCTTCTAGTAAGCAAGTGTCCCTGAACAGAAGTGTTCAAAATGCTCCAGTTCCTAAAATTTCTAGAATGAAGCATGACAGTGGAGGAAATTGTTTGATTGGTCAGGTAAAAAGGCAAAAGCTTGAGATCCGTTTAAACAGATCCAGTTTTGATCCAGAAGAATTTGCTTTGTACAGAAGATATCAGCTCAAAGTACATAATGATAAACCACAAAATGTCACAGAGAACTCATATCGTAGGTTTTTGGTTGATACTCCATTAATACAAGTTTCTCCCACTGGTGATAGCACAGTTCCTCCTTGTGGTTTTGGCTCTTTCCATCAACAATATCTAATAGACGGCCAGTTAGTGGCAGTTGGTGTTATAGATATCCTTCCTAAATGTTTGTCAAGTAAATATTTGTTCTGGGATCCAGACTTTGCCTTTCTATCACTAGGCAAGTACTCGGCTTTTCAAGAAATAGGTTGGGTGAAAGAAAACCAGGTTTATTGTCCTAGTCTACAATACTATTATCTTGGCTACTATATTCACTCTTGCAGCAAGATGAGATACAAAGCTGCATATCGTCCTTCAGAGCTTTTATGCCCTCTTCGCTATCAGTGGGTTCCATTTGACATTGCAAGGCCTCTGCTTGACAGAAAACCTTATGTTGTCTTATCAGATTCTTCCATTTTACAAAATGGAGAGTCATCCCTACCTCAAACTACGGAAGATGTAATGAGAAGGGGTTTTGATGATGTTGGCCAAGAAGATGCAAATGATGTTCCAATGCTTGATGATGAAGAAATGGTTGAGTCTGAATCAGAATGCTCTGATGATGAACCTGACCTAGAAACCACTTCAGATGATGATCCAGAAATTGCTGATGTCAGCAAGGTTTTGCTAGGGATAAAGGGATCTCATGTGAAATACAAGGATCTGCGGGTTGTCTTTGGTCCTGAGCAGCAGAGTTACTTGGAGTCACAATTGCGGAGATACAGGAAGGTTGTGGGTCCATTGCTATCCGAGCGAATCGTCTATTCGCTCGGATAA

>Glyma18g03240.1   sequence type=predicted peptide   gene model=Glyma18g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSSNTPKESVVVDCGRRRTSCGYCRSSRHNSISHGMWAHSLTVDDYQDLLDRGWRRSGCFLYKPEMERTCCPSYTIRLKASDFVPSKEQLRVSRRMQRFLDGTLDVKKVDVMEDPTKSGIFTRPMSEESLAAGSENKDEVEKSLHYLSNQIDNVIHILIEKGEFPSGIQLPNASVKRVSQGKRKLLVNGSEDLLYSSNIAFQIAASIKRAQSCDKVVDDSKPARVCEKENDSSPKIIAEKLVASLDPTVKNSDLSIRACNGHINFYASSKQVSLNRSVQNAPVPKISRMKHDSGGNCLIGQVKRQKLEIRLNRSSFDPEEFALYRRYQLKVHNDKPQNVTENSYRRFLVDTPLIQVSPTGDSTVPPCGFGSFHQQYLIDGQLVAVGVIDILPKCLSSKYLFWDPDFAFLSLGKYSAFQEIGWVKENQVYCPSLQYYYLGYYIHSCSKMRYKAAYRPSELLCPLRYQWVPFDIARPLLDRKPYVVLSDSSILQNGESSLPQTTEDVMRRGFDDVGQEDANDVPMLDDEEMVESESECSDDEPDLETTSDDDPEIADVSKVLLGIKGSHVKYKDLRVVFGPEQQSYLESQLRRYRKVVGPLLSERIVYSLG*







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