Glyma18g04540 - SoyBase

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Report for Sequence Feature Glyma18g04540

Feature Type:	gene_model
Chromosome:	Gm18
Start:	3317468
stop:	3321851
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g04540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G37710	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:14979159-14981400 FORWARD LENGTH=436	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0016042	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid catabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
KOG2088	KOG	Predicted lipase/calmodulin-binding heat-shock protein	JGI		ISS
PTHR21493	Panther	CGI-141-RELATED/LIPASE CONTAINING PROTEIN	JGI		ISS
PTHR21493:SF1	Panther	CALMODULIN-BINDING HEAT-SHOCK PROTEIN	JGI		ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
PF03893	PFAM	Lipase 3 N-terminal region	JGI		ISS
UniRef100_Q41251	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding heat-shock protein n=1 Tax=Nicotiana tabacum RepID=Q41251_TOBAC	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EFC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFC9 related cluster n=1 Tax=unknown RepID=UPI000233EFC9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g04540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g04540

Paralog	Evidence	Comments
Glyma11g33660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g04540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g040500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g04540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g04540

Limit To All Plant Sequences

>Glyma18g04540.1   sequence type=CDS   gene model=Glyma18g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGCCTCATGCGGGGTGGTGGAGTGCGTTTTCGTTCTGGGCTGCGCGCGGTGGCTGTGGAAGCGCTGCACCTACGTGGGCAGCTACGACAGCGCCACTTGGCCCGCCGCCACCGCCGACGAGTTCGACCGGGTGCCGCGCGTCTGCCGCCTCATCCTCGCCAACTACGAGCCCGATCTCCGCACCCCGCAGTACCAAAAACCCACCTCCGCCACCGGCCACCGCCTGAACCCGGACTGCGTCATCAAGCGCGTGACCTACGAGGACACGCTGGGCCACGCGCCTCCGTACATAATCTACCTCGACCACGAGAACAAGGAGATCGTGCTCGCCGTGCGTGGGCTGAACCTCGCCAAAGAGAGCGACTACAAGGTTCTCCTCGATAACCGGTTAGGGCAACAAATGTTTGATGGTGGGTATGTTCATCATGGGTTGTTGAAATCGGCAGTGTGGTTGTTGAACCGTGAATCGGAGACGCTGAAGCGGTTGTGGGTGGAGAATGGTTCGGAGTATGAGATGGTTTTCGCGGGGCACTCGTTGGGTTCTGGGGTGGTGTCGCTGTTGACCATTTTGGTTGTGAATCATAGGGACCGTTTGGGTGGGATTCCCAAGGAGAAGATTCGGTGCTATGCGCTTGCTCCAGCTAGGTGTATGTCCCTGAATTTGGCTGTCAAGTATGCCAATGTCATTCATTCTATTGTTTTGCAGGATGATTTCTTGCCAAGAACGGCCACTCCATTGGAAGATATATTCAAATCAATATTCTGCTTGCCCTGCTTGTTGTTCTTGGTTTGCCTGAGAGACACCTTCATACCTGAGGGTAGAAAGCTTAGAGATCCAAGGAGACTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTCTGCAGATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCTGTTGATGGAAGATTTGAGCATATTGTCTTGTCCTGTAATGCAACATCGGATCATGGAATTATTTGGATTGAAAGGGAGGCTGAGAAAGCCTTACAATTAATGAAGGCTCAGAGCTCTGAAACTGTGACAGACCCTCCAACAGTACAAAAGTTTCAGAGGTTGAAGACCATAGAGAAAGAACATAGAGATGCTTTGGAAAGAGCTGTTAGCCTGAATGTACCTCATGCAGTGGACACTGCTGAGAAAGAAACATCTGAGAACAATGAAGGTGACGACGATGCATCCGCCAGTGCAAACAATAACGTCTCAAGTAACCAATCAAAATCTAGTGGTGGAAGGTCGAACTGGGATGAGGTAGTTGAAAAACTTCTAAAGAAGAAGAGTGAAACGGGAGAACAAAACCTGGAAAGGGATACGAATGTCACACAATAA

Predicted protein sequences of Glyma18g04540

Limit To All Plant Sequences

>Glyma18g04540.1   sequence type=predicted peptide   gene model=Glyma18g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASCGVVECVFVLGCARWLWKRCTYVGSYDSATWPAATADEFDRVPRVCRLILANYEPDLRTPQYQKPTSATGHRLNPDCVIKRVTYEDTLGHAPPYIIYLDHENKEIVLAVRGLNLAKESDYKVLLDNRLGQQMFDGGYVHHGLLKSAVWLLNRESETLKRLWVENGSEYEMVFAGHSLGSGVVSLLTILVVNHRDRLGGIPKEKIRCYALAPARCMSLNLAVKYANVIHSIVLQDDFLPRTATPLEDIFKSIFCLPCLLFLVCLRDTFIPEGRKLRDPRRLYAPGRMYHIVERKFCRCGRFPPEVRTAIPVDGRFEHIVLSCNATSDHGIIWIEREAEKALQLMKAQSSETVTDPPTVQKFQRLKTIEKEHRDALERAVSLNVPHAVDTAEKETSENNEGDDDASASANNNVSSNQSKSSGGRSNWDEVVEKLLKKKSETGEQNLERDTNVTQ*

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