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Report for Sequence Feature Glyma18g47060

Feature Type:gene_model
Chromosome:Gm18
Start:56712581
stop:56718318
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01580AT Annotation by Michelle Graham. TAIR10: ferric reduction oxidase 2 | chr1:209395-212810 FORWARD LENGTH=725 SoyBaseE_val: 0ISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0015688GO-bp Annotation by Michelle Graham. GO Biological Process: iron chelate transport SoyBaseN/AISS
GO:0055072GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000293GO-mf Annotation by Michelle Graham. GO Molecular Function: ferric-chelate reductase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
PTHR11972Panther NADPH OXIDASE JGI ISS
PTHR11972:SF3Panther UNCHARACTERIZED JGI ISS
PF01794PFAM Ferric reductase like transmembrane component JGI ISS
PF08022PFAM FAD-binding domain JGI ISS
PF08030PFAM Ferric reductase NAD binding domain JGI ISS
UniRef100_F5BSM3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ferric reductase n=1 Tax=Lotus japonicus RepID=F5BSM3_LOTJA SoyBaseE_val: 0ISS
UniRef100_UPI000233E417UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E417 related cluster n=1 Tax=unknown RepID=UPI000233E417 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g235900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g47060.1   sequence type=CDS   gene model=Glyma18g47060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTAGAAGCGGTGAAAAGGTCTCCTTCTCAAGAAAAATATGGCAGGGTTCAATCTGCAATAAGGTTGTTAGTGCTGGTTGTGTTTCTGGGTTGGATTTTCGTATGGATAGTGACTCCAACAAACACTTACCAACAAAAATGGCAGCCTCGGCTTCAAGCAAAGACTAATTCTATTTTTGGTGCACAAGGTGCAATGCTTCTGGTATACACTTTTCCAATCTTGTTCATAGCTGTTTTGGGATGTGTGTACGTTCACATAGCCAAAAAAGGAAACGGTTTCGGCAAGGAAAGCTGCAGTAGTTATGGCAAGAAACGTGAGGTATCTATATGGAAGCGTTTGGTGCTTGTGAGAGGCCCTCTTGGCATAGTTTCTGGAACAGAAATGGTCTTCTTGTTAATGTTCATTGTTCTCCTAGTTTGGTCCTTTTCAATCTATCTGCATAATGGCTTTGCCAAAATCACCCACAAATCAGCAGCAGAACACGGTCTAAAAGTCTGGGAGAAGAAACTAGATATTGCATCTGTGAGGTTGGCCCTAGTTGGGAACATATGCTTGGCATTCCTGTTTTTCCCGGTTGCTCGTGGTTCCTCAGTGCTACCTCTGCTTGGACTCACACCAGAGAGTTGCATCAAATACCATATTTGGCTAGGAAACGTGGCCATGACCCTTTTCACTGCTCATGGTATTTGTTTCATCATCTATTGGACAGTTACCGATAAACTTTCAAAGATGCTAGAATGGAAAAAAACTGGGATATCAAATGTAGCTGGAGAGGTTGCTTTGCTTGCTGGTTTGTGCATGTGGATTGCAACCATCCCTCGCAATAGGCGAAAAGTTTTTGAGCTCTTCTTCTACACTCACTACCTCTACACCCTCTTCATTGTCTTCTTCATCTTTCACGTGGGCATTTTCTATGCATGCACTATTCTCCCCGGTTTCTACCTCTTCTTGGTTGATCGGTACCTAAGGTTTTTGCAATCAAGACGCCGAGTTCGTTTGGTTTCTGCTCGTGTTTTACCATGTGAAACTGTAGAACTCAACTTCTCCAAGAGCCATGATTTGACTTATAATCCCACAAGTATTATGTTCATAAATGTACCAAGTATATCCAAACTTCAGTGGCATCCATTTACCATTACTTCTAATAGTAATTTGGAGCCAAAAATGATGAGTATTGTCATTAAAGGTGAAGGAACTTGGTCCCAGAAGCTCTACCAGATGCTTTCAACCCCTTCTGCAATTGATCATCTCAATGTCTCAGTTGAAGGTCCCTATGGACCAGCATCAACCAATTATCTAAGGTATGACACTATTGTGATGGTTAGTGGAGGGAGTGGAATCACCCCTTTTATATCCATCATCCGGGAGCTATTGTATTTGAACACAACATTCAGATATAGAACCCCAAAAGTTATCCTAATTTGTGCATTCAAGAACTCTTACTATCTCTCAATGCTAGACCTCATCCTTCCAAATTCTGGCACCCCCTATGATATGTCCAACATGCAACTACAAATTAAGGCTTACATCACAAGAAAGGAGGAGCATAGATTGGAAAACCAAATTCACCTTCAACAAATATGGTTCAAACCCAAGGCAACAGATGCACCCATATCAGCTATTTTAGGTCCAAACAATTGGCTTTGGCTTTGTGCTATAATCTCGTCCTCGTTCATAATTTTCCTCATCTTAATTGGGATCATTACCCGATTCATCATTTTCCCTATAGACCATAATTCTAATAAAATATTTTCACAACCTTTGAGGTCATTCCTCAACATTTTTGCAATATGTGTGTCCATATCAATGGCAGCTAGTGCAGCTGTTCTTTGGAACAAGAAATACAACGACAGAGAAGCAAAACAGATTCAGAACTTAGAAGGATCATCATCAGCAGAATCCCCAAAGTTGAATACTGATGAAGGAGATAAAGAACTGGAAAGCCTCCCACAGCAATCCCTTGTTCAAGCTACAAAGGTGCATTATGGAGCAAGACCTGATCTAAGAAGACTGCTATTGGAACTTGAAGGGTCAAGAGTGGGAGTTTTTGTTTCTGGACCCAAGAAAATGAGGCAAGAGGTTGCTGCCATTTGCTCATCTGATTTAGGAGAAAATCTGCATTTTGAATCCTTTAGCTTTAACTGGTAG

>Glyma18g47060.1   sequence type=predicted peptide   gene model=Glyma18g47060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVEAVKRSPSQEKYGRVQSAIRLLVLVVFLGWIFVWIVTPTNTYQQKWQPRLQAKTNSIFGAQGAMLLVYTFPILFIAVLGCVYVHIAKKGNGFGKESCSSYGKKREVSIWKRLVLVRGPLGIVSGTEMVFLLMFIVLLVWSFSIYLHNGFAKITHKSAAEHGLKVWEKKLDIASVRLALVGNICLAFLFFPVARGSSVLPLLGLTPESCIKYHIWLGNVAMTLFTAHGICFIIYWTVTDKLSKMLEWKKTGISNVAGEVALLAGLCMWIATIPRNRRKVFELFFYTHYLYTLFIVFFIFHVGIFYACTILPGFYLFLVDRYLRFLQSRRRVRLVSARVLPCETVELNFSKSHDLTYNPTSIMFINVPSISKLQWHPFTITSNSNLEPKMMSIVIKGEGTWSQKLYQMLSTPSAIDHLNVSVEGPYGPASTNYLRYDTIVMVSGGSGITPFISIIRELLYLNTTFRYRTPKVILICAFKNSYYLSMLDLILPNSGTPYDMSNMQLQIKAYITRKEEHRLENQIHLQQIWFKPKATDAPISAILGPNNWLWLCAIISSSFIIFLILIGIITRFIIFPIDHNSNKIFSQPLRSFLNIFAICVSISMAASAAVLWNKKYNDREAKQIQNLEGSSSAESPKLNTDEGDKELESLPQQSLVQATKVHYGARPDLRRLLLELEGSRVGVFVSGPKKMRQEVAAICSSDLGENLHFESFSFNW*







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