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Report for Sequence Feature Glyma18g49080

Feature Type:gene_model
Chromosome:Gm18
Start:58469077
stop:58472330
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15100AT Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein | chr5:4892159-4893937 REVERSE LENGTH=367 SoyBaseE_val: 5.00E-133ISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009926GO-bp Annotation by Michelle Graham. GO Biological Process: auxin polar transport SoyBaseN/AISS
GO:0010252GO-bp Annotation by Michelle Graham. GO Biological Process: auxin homeostasis SoyBaseN/AISS
GO:0010315GO-bp Annotation by Michelle Graham. GO Biological Process: auxin efflux SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0009672GO-mf Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity SoyBaseN/AISS
PF03547PFAM Membrane transport protein JGI ISS
UniRef100_Q5FV66UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier protein n=1 Tax=Medicago truncatula RepID=Q5FV66_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E9CAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E9CA related cluster n=1 Tax=unknown RepID=UPI000233E9CA SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g37561 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g255800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g49080.1   sequence type=CDS   gene model=Glyma18g49080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCCTTAGCCGATGCCTATCATGTAGTGGCAGCCACTGTCCCATTATATGTGACCTTGATACTGGCCTACATTTCTGTGAAATGGTGGAAGATCTTCACACCAGATCAATGTTCAGGCATAAACAAATTTGTGGCCAAGTTCTCTATCCCACTTTTGTCTTTTCAAGTCATTTCCTCCAACAACATCTACAAAATGAGCCTCAAACTCATGTATGCCGACTTTCTCCAGAAATTGCTTGCATTTCTTCTCTTAATAGCAATCACTAAGATCAGTGGCCGAGGAGGTTTGAAGTGGATCATAACCGGTTTGTCATTAACAACACTTCCTAACACTTTGATCCTTGGAATCCCTCTCATGAAGGCTATGTATAAGGGTGAAGCAGTTGTTCTCCTTGCACAGATTATTTTCTTGCAGAGCATGATTTGGTACAATTTGCTGTTGTTCCTTTATGAACTTGATGCCGTCAACAAGACCAGGCCTACTGCAGCCGCACCACCATCACAAGGATCTGGAGAAACAGACACAGCTCGTGAAGTACAATCAAAAAGAGAAGAAGACGCAGAACCTAGAATAAAAAGGAAGATGAAGGTCATGCTCATTCTTGTCACAGTGGGAAAGAAGCTAATCAGAAATCCTAATACATATGCAACTTTATTGGGTTTTATTTGGTCAAGCATACAATTCAGGTGGGGATTACATATGCCTGAAGTTGTTAATCAGTCAATAGAAATATTGTCCAATGGAGGTCTTGGCATGGCAATGTTCAGCCTAGGTCTGTTTATGGCATCACAGTCAAGCATCATAGCATGTGGGCCAAGGATGACAATGGTGGCAATAGGACTGAAAGTTGTGCTTGGACCTGCTCTGATGGCTGTGGCATCCCTTGTGATTGGATTAAGAGACAAACTGTTTAAAGTGGCAATTGTTCAGGCAGCTCTACCCCAAGGAATTGTTCCTTTTGTTTTTGCCAAGGAGTATAATGTCCATCCAGCCGTTTTAAGCACTGCGATCTTGTTAGGAATGCTCATTGCCTTGCCGGTGGAATTGGCCTTCTACTTCCTATTAGCAATTTGA

>Glyma18g49080.1   sequence type=predicted peptide   gene model=Glyma18g49080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISLADAYHVVAATVPLYVTLILAYISVKWWKIFTPDQCSGINKFVAKFSIPLLSFQVISSNNIYKMSLKLMYADFLQKLLAFLLLIAITKISGRGGLKWIITGLSLTTLPNTLILGIPLMKAMYKGEAVVLLAQIIFLQSMIWYNLLLFLYELDAVNKTRPTAAAPPSQGSGETDTAREVQSKREEDAEPRIKRKMKVMLILVTVGKKLIRNPNTYATLLGFIWSSIQFRWGLHMPEVVNQSIEILSNGGLGMAMFSLGLFMASQSSIIACGPRMTMVAIGLKVVLGPALMAVASLVIGLRDKLFKVAIVQAALPQGIVPFVFAKEYNVHPAVLSTAILLGMLIALPVELAFYFLLAI*







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