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Report for Sequence Feature Glyma18g51520

Feature Type:gene_model
Chromosome:Gm18
Start:60381352
stop:60388438
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38560AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:15439844-15443007 FORWARD LENGTH=681 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005199GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of cell wall SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF644Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9T5W9UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5W9_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000189D225UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D225 related cluster n=1 Tax=unknown RepID=UPI000189D225 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g280200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g51520.2   sequence type=CDS   gene model=Glyma18g51520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGCAAACCCTTCCCCAAATGCTTCCCCTGTTGCAGTGCCTCCAGCACTTGGTGCTATTTTATCACCACCTCCTTCTTCATCTTCTCCAACAAACACTTCCACCCCACCATCACCTCCCAGTTCTTCTCAGCCTAATCAAACACAAACACAAACACAAACACCCAATTCCCCTGCTCCTTCATCTCCTTCTGACCCTTCTGCTCCACCTCCTTCTCCTCCTCAGGCAGTGCCATTAACCCCTCCTCCTTCCATATCACTGTCTCCTCCACCATCATCTACACCACCACCAACTTTGCCCCCTCCATCACCACCTGATTCTCCACCACCATTGCCACCTGCATCTCCAACCCCACCAGTTACAACATCTCCCCCCTCACCACCAGTTACAACATCTCCCCCCTCACCACCAGCTACCACATCCCCTCCTCCAGCTGAAACTCCACCTTCCCTTCCAAATTTGTCTCCACCATCTCCACCAGCCGGTTCCCCTCCTCCTCAATCACCTCCCACAACAATTCCACCTCCCTCTCGACCGATTTCGCCATCTCCTCCTCCTCCGGCCAATTTTCCAAGGCCACCAACCACTAGAACTCCTCCAGAGAAAGAAAATCCACCAAAAACTACTCCTTCACATGCATCTCCTCCATCAGTTTCTGAAACTCCTCCTAAACCTCCTTCCTCTGATGTTCCCCCTCCATCCACATTGCCTTCAACTCCTCCTTCAGACCCTTCAGGATCTTCACCTCCAGCTTCTTTGCCTGATCCCCCAACTAATAAAACAGTGGTGGGGGGTCCGAAGGTGTCGCTACCCTCTCTTCCAACTGAGAAACCCACTGCTAGACCTACTAATGATGGTACTAACAGTATGTCTTCAAACAACACACCTTCACATTCTGGAGGGTTGAGCACTGGAGGATCTGTGGCTATTGGAATTGTAGTTGGTTTTATTGTCCTCAGCCTTCTTGTTATGGCTGTGTGGTTTGCACAGAAGAAAAAGAAGAAGGGAACAGGATCAAGAGGTAGTTATGCTGCTCCTTCTCCATTTACCTCATCCCACAATTCAGGTACCTTATTCTTGAGGCCGCAGTCTCCGGCCAACTTTTTAGGTAGTGGCTCTGGTAGTGATTTTGTATATTCTCCATCAGAGCCTGGTGGTGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATTCAAGCTACAAATGGGTTTTCAGCACAAAATTTGTTGGGAGAAGGTGGATTTGGCTGTGTTTATAAAGGTTTGCTGATAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAATTGGTGGTGGGCAAGGGGAACGCGAATTCAGGGCAGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTGGTTTCTTTAGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCATTACCATCTCCACGGTGAAAATAGACCAGTTCTAGATTGGCCTACCAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTGTCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTACTTGATCTCAACTATGAAGCTCAAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCGACAAGTGGAAAACTTACTGAAAAGTCTGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGACCTCTGTTGACGGAAGCACTTGACAATGAGGACTTTGAAATTTTGGTGGATCCAAGACTGGGGAAGAACTACGATAGAAATGAAATGTTTCGGATGATCGAGGCTGCCGCAGCCTGTGTACGCCACTCATCGGTGAAGAGACCACGCATGAGTCAGGTGGTGAGAGCTTTAGATTCCTTGGATGAGTTTACGGATCTCAATAACGGAATGAAACCGGGACAGAGTTCGGTGTTTGATTCGGCGCAGCAATCTGCACAAATCAGAATGTTTAGGAGGATGGCTTTTGGGAGCCAAGATAGTTCCGGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGAGATCACGACCCAACAACTGTCTTCTCCCAAAATAAAACTGGGCATGGGAACGTTTGA

>Glyma18g51520.2   sequence type=predicted peptide   gene model=Glyma18g51520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASANPSPNASPVAVPPALGAILSPPPSSSSPTNTSTPPSPPSSSQPNQTQTQTQTPNSPAPSSPSDPSAPPPSPPQAVPLTPPPSISLSPPPSSTPPPTLPPPSPPDSPPPLPPASPTPPVTTSPPSPPVTTSPPSPPATTSPPPAETPPSLPNLSPPSPPAGSPPPQSPPTTIPPPSRPISPSPPPPANFPRPPTTRTPPEKENPPKTTPSHASPPSVSETPPKPPSSDVPPPSTLPSTPPSDPSGSSPPASLPDPPTNKTVVGGPKVSLPSLPTEKPTARPTNDGTNSMSSNNTPSHSGGLSTGGSVAIGIVVGFIVLSLLVMAVWFAQKKKKKGTGSRGSYAAPSPFTSSHNSGTLFLRPQSPANFLGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHGENRPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEAQVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLTEALDNEDFEILVDPRLGKNYDRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEFTDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSGFFNESQSSWRSRDHDPTTVFSQNKTGHGNV*







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