Glyma20g02910 - SoyBase

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Report for Sequence Feature Glyma20g02910

Feature Type:	gene_model
Chromosome:	Gm20
Start:	2614410
stop:	2619198
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g02910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30480	AT	Annotation by Michelle Graham. TAIR10: D111/G-patch domain-containing protein \| chr1:10790315-10792423 FORWARD LENGTH=387	SoyBase	E_val: 7.00E-175	ISS
GO:0000724	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006312	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic recombination	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0010212	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation	SoyBase	N/A	ISS
GO:0043687	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-translational protein modification	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
KOG1996	KOG	mRNA splicing factor	JGI		ISS
PTHR13288	Panther	DNA-DAMAGE REPAIR PROTEIN DRT111	JGI		ISS
PF01585	PFAM	G-patch domain	JGI		ISS
UniRef100_G7JHL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-damage-repair/toleration protein DRT111 n=1 Tax=Medicago truncatula RepID=G7JHL2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NDG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDG9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g02910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g02910

Paralog	Evidence	Comments
Glyma07g35050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g02910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g024100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g02910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g02910

Limit To All Plant Sequences

>Glyma20g02910.1   sequence type=CDS   gene model=Glyma20g02910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTGGTCTATACGGAGACCTTCCTCCACCTTCCTCCGCCGAGGAAGACAACAAGCCCACCCCCAACGTCTGGTCCTCCAGCACCAAGATGGCTCCCGCCACGCTCCGCAAGCCCGCCTCCCTCTTCGCTCCCCCCCAAACCCTCCTCCGGGCCCAGCCCAAGCCCAGGCCCACCACCACAACCATCCCCAAGCCCATCCTCTCCTCCTCGCCCGCCCCTCCCCCTGATGACGCCCTCCTCCAGCCCGCCCTCGTTGGCGTCCAGTCCACCGTCCTCGAAGAATACGACCCGACCCGGCCCAACGACTACGAGGACTACCGCCGCGACCGCAAGCGCAAAGCCCGTGAGGCCGAGATGCTGCGCGAGCTCGAGCGCCGCCGCCACGAGGAGGAAGAGGAGGAGAAGGAAAGGGAAAAGGAAAGAGAAAGAGAGAGAGAAAGAGATCACAGCAATAACAACGATTCGTCGTCGTCGAGGCTTAATGTTTCCGGCGAAGAGGCGTGGAGGAGGCGCGCTGCGATGAGCGGGGCGGGGTCTGGGTCGGGGGCGGTGTTGGTGCCGAGGTCGCCGTCGCCACCCCCGGGGAATGTGGACGGGTTTACAATCGGGAAGTCGGAGACGGGGGGATTGGGGGTTGGGGCTGGCGGGCAGATGACGGCGGCGCAGCGGATGATGGCGAAGATGGGGTGGAAGGAAGGGCAGGGGCTGGGGAAACAGGAGCAGGGGATCACCACGCCTTTGATGGCGAAGAAGACCGATAGACGAGCCGGGGTTATTGTGAATGCCAGTGACAACAACAATAGCAGCAGCAGCAAGAAAGTTAAGAGTGTTAACTTCAATGGTGTGCCTACCAGGGTGCTGCTGCTCAGGAACATGGTGGGTCCTGGTGAGGTAGACGACGAGCTAGAAGATGAGGTAGGATCTGAATGTGCCAAATATGGAACTGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTCCCCGTTCATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCTGAAGAAACAACTAAAGCGCTTGTCGACCTTGATGGTCGGTACTTTGGGGGTAGAGTGGTGCGTGCCTCATTTTATGACGAGGAAAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCCGGCTTTACTTGA

Predicted protein sequences of Glyma20g02910

Limit To All Plant Sequences

>Glyma20g02910.1   sequence type=predicted peptide   gene model=Glyma20g02910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAQPKPRPTTTTIPKPILSSSPAPPPDDALLQPALVGVQSTVLEEYDPTRPNDYEDYRRDRKRKAREAEMLRELERRRHEEEEEEKEREKERERERERDHSNNNDSSSSRLNVSGEEAWRRRAAMSGAGSGSGAVLVPRSPSPPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNNNSSSSKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVHEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFT*

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