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Report for Sequence Feature Glyma20g16880

Feature Type:gene_model
Chromosome:Gm20
Start:23675018
stop:23700020
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51230AT Annotation by Michelle Graham. TAIR10: VEFS-Box of polycomb protein | chr5:20824153-20829344 FORWARD LENGTH=631 SoyBaseE_val: 0ISS
GO:0006349GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting SoyBaseN/AISS
GO:0009910GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG2350 KOG Zn-finger protein joined to JAZF1 (predicted suppressor) JGI ISS
PTHR22597Panther POLYCOMB GROUP PROTEIN JGI ISS
PF09733PFAM VEFS-Box of polycomb protein JGI ISS
UniRef100_C9E9W1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Embryonic flower 2 n=1 Tax=Camellia sinensis RepID=C9E9W1_CAMSI SoyBaseE_val: 0ISS
UniRef100_I1NEC6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEC6_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g23295 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g069800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g16880.3   sequence type=transcript   gene model=Glyma20g16880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTCTTAGTTTACTTGGTTTGCTCCACTTCCCCAAACTCAGCACTAAATTGTGTTTCTTTTGAGAGTATTTCAGGGAGAAAAAGACAGAGACACCGAAAGAGATAGACACAGATAGAGTGCAACTTGGTTAGATTTCAGTCATTTCAAGGATATCGATTTTCAATTTCGCGTCTTCCATTTTGGGTTCAATTCTGAGGTTTCTAACAAACAAGAGAAGATATCACATTCTTAAAGATTCACAATTTCAGATAAATATTATATGTATCTGAGACTTTTTTAATAAGAAGAATGCCAGGCATTCCTGTTTCCACTCGTGCTACCTCAAGCCATCCAGATGCTTGTGAACATTTATCTGCGGAAGAGGAGCTTGCAGCTGAAGAGAGTCTTTCAATTTATTGCAAGCCTGTAGAACTTTACAACATTCTCCAGCGACGTGCCATGAGAAACCCATCATTCCTTCAGAGATGTTTGCACTACCGGATAAAGGCAAAGCACAAGAAGAGAATCCATATGGCAGTTTCCTTGACGAGGACTATAACTGAAAGCCAAAACGTGTTTCCCATGTCTATCTGTCTTGCAAGGCGGATTTCTGATCATGGAGCTTCAAGGCAAACCGCCATGTATCGAATTGGTCGGATTTTCATCTTCCGAAACTCCCCTGGAATTGATTTGAATACTCAGGTCCAGGCAAATTTTACACTCCCTGAAGTAAACAAGTTAGCTGAGGAAGCTAGATCTTGCTCACTTGATATCTTGTTTGTCAGCACTGCCACTGTGGGAAACTCACATCTATCATCTGGAGTCAATTCAAACTCTATGCCTTCGGATCTGAGTCATCTAGCTTTTTTTGAATCTGGAGAATACTGCCTTTGTGGGAAAGTGTCTTTAGAATCACTTTATATGGCTTGGGATTGTTTTCCGAATTTTCGTTTGGGACAGCGAGCAGAGATTATGTCAACTGTGGATTTGCTTCCGTGTATTCTGAAGTCTGATTTTCCAAATGATGATACAAGAATCTCCATTCAAGTTCCCTCTAATTTTGAGAATATGAGTACATCAAAGCAAGTACAAATCACAATTTCTGCTGAAGAGTTTGGGGCCAAAGAAAAATCTCCCTATCTTTCATATGCAGGCAGTGAAGTACCATCCTCATCATTATCTCACATGATCGGGTTGAGGGAAGGAAATGTAATGTTTAATTACAGGTATTACAATAATAAGTTGCAGAGGACAGAAGTCACCGAAGATTTCACTTGTCCATTTTGTTTGGTTAAATGCGCGTGTTTTAAGGGTCTAAGATGTCATTTGTCATCATCACATGATCTCTTCAACTTTGAATTTTGGGTATCAGATGAATGTCACGCTGTAAATGTGTCTGTGAAAAATGATATCTCGAGATCGGAGATTGTTTCTGATGATGTTGATCCAAGAGTGCAAACATTTTTCTTTTGTGGAAAGCCTCTAAAGCGTAGGACAACAGCAGACCAATCTTTGAAAAATGCAGTGGGCTTAGAGTCTTCCTTTCCTGCAGGAGGGACTGATATTTTGGAGAAGGATGATGGTATTTCTGCCACAATTATTCGATCACGTCCTGATCGAGACTCTGTTCAGTCAATGTCTGACTGTGATCAAGCAGTGCTTCAGTTTGCCAAGACAAGGAAGTTGTCAATTGAGCGTCCTGACCCACGAAACAGTACCTTCTTGAGGAAGCGACAATTTTTTCATTCACACAAAGCTCAGCCAATGGCAATTGAACAAGTTCTATCCGATAAAGATAGCGAAGATGAAGTTGATGATGATGTTGCCGATTTTGAAGATCGAAGGATGCTTGAAAATGTTGTTGATGTGAGCAATGATGAGAAGACTTTCATGCATATGTGGAACTCATTTGTTCGGAAGCATCGTGTGATTGCAGATGGTCACATTTCATGGGCATGTGAGGCTTTCTCAAAATTGCATGCACCTGAGTTTGTTCAATCTCCCTCACTGGCAGGGTGTTGGAGAATATTTATGGTCAAATTATACAATCATGGTCTTCTAGATGCTCGGACCATGAATGACTGTAATATTATTCTTGAGCAATACCAAAGGCAGAATTCAGATCCCAAAAGCTAAACAAAACTCATTTTTACCCTCTTAATTGAAGAAATTGATGGCAAATAGTGAGGACATTTTGTTTTCGTTTTTTCCCCCTCACAAGGTACAGATTGCTGTCAATTTCTTGTGGGGTTTCAATTTTACATCTTTCCTATTCTGGGGTACTGTTATGTTCGTTACCCTAATTTTGTTCATGGATAATATTTTCTTCCCTCGGGCTTCAAACTGAGGAAATTTTTAAGCAACTTTAATTGCATTGACATGATTATTCTGATGTTCTGCTTTTCCTGTTTCTTTGTTGACACCAAATTTATGTTCATAACGGGGTTCACTGCTTTTATCT

>Glyma20g16880.2   sequence type=CDS   gene model=Glyma20g16880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGGCATTCCTGTTTCCACTCGTGCTACCTCAAGCCATCCAGATGCTTGTGAACATTTATCTGCGGAAGAGGAGCTTGCAGCTGAAGAGAGTCTTTCAATTTATTGCAAGCCTGTAGAACTTTACAACATTCTCCAGCGACGTGCCATGAGAAACCCATCATTCCTTCAGAGATGTTTGCACTACCGGATAAAGGCAAAGCACAAGAAGAGAATCCATATGGCAGTTTCCTTGACGAGGACTATAACTGAAAGCCAAAACGTGTTTCCCATGTCTATCTGTCTTGCAAGGCGGATTTCTGATCATGGAGCTTCAAGGCAAACCGCCATGTATCGAATTGGTCGGATTTTCATCTTCCGAAACTCCCCTGGAATTGATTTGAATACTCAGGTCCAGGCAAATTTTACACTCCCTGAAGTAAACAAGTTAGCTGAGGAAGCTAGATCTTGCTCACTTGATATCTTGTTTGTCAGCACTGCCACTGTGGGAAACTCACATCTATCATCTGGAGTCAATTCAAACTCTATGCCTTCGGATCTGAGTCATCTAGCTTTTTTTGAATCTGGAGAATACTGCCTTTGTGGGAAAGTGTCTTTAGAATCACTTTATATGGCTTGGGATTGTTTTCCGAATTTTCGTTTGGGACAGCGAGCAGAGATTATGTCAACTGTGGATTTGCTTCCGTGTATTCTGAAGTCTGATTTTCCAAATGATGATACAAGAATCTCCATTCAAGTTCCCTCTAATTTTGAGAATATGAGTACATCAAAGCAAGTACAAATCACAATTTCTGCTGAAGAGTTTGGGGCCAAAGAAAAATCTCCCTATCTTTCATATGCAGGCAGTGAAGTACCATCCTCATCATTATCTCACATGATCGGGTTGAGGGAAGGAAATGTAATGTTTAATTACAGGTATTACAATAATAAGTTGCAGAGGACAGAAGTCACCGAAGATTTCACTTGTCCATTTTGTTTGGTTAAATGCGCGTGTTTTAAGGGTCTAAGATGTCATTTGTCATCATCACATGATCTCTTCAACTTTGAATTTTGGGTATCAGATGAATGTCACGCTGTAAATGTGTCTGTGAAAAATGATATCTCGAGATCGGAGATTGTTTCTGATGATGTTGATCCAAGAGTGCAAACATTTTTCTTTTGTGGAAAGCCTCTAAAGCGTAGGACAACAGCAGACCAATCTTTGAAAAATGCAGTGGGCTTAGAGTCTTCCTTTCCTGCAGGAGGGACTGATATTTTGGAGAAGGATGATGGTATTTCTGCCACAATTATTCGATCACGTCCTGATCGAGACTCTGTTCAGTCAATGTCTGACTGTGATCAAGCAGTGCTTCAGTTTGCCAAGACAAGGAAGTTGTCAATTGAGCGTCCTGACCCACGAAACAGTACCTTCTTGAGGAAGCGACAATTTTTTCATTCACACAAAGCTCAGCCAATGGCAATTGAACAAGTTCTATCCGATAAAGATAGCGAAGATGAAGTTGATGATGATGTTGCCGATTTTGAAGATCGAAGGATGCTTGAAAATGTTGTTGATGTGAGCAATGATGAGAAGACTTTCATGCATATGTGGAACTCATTTGTTCGGAAGCATCGTGTGATTGCAGATGGTCACATTTCATGGGCATGTGAGGCTTTCTCAAAATTGCATGCACCTGAGTTTGTTCAATCTCCCTCACTGGCAGGGTGTTGGAGAATATTTATGGTCAAATTATACAATCATGGTCTTCTAGATGCTCGGACCATGAATGACTGTAATATTATTCTTGAGCAATACCAAAGGCAGAATTCAGATCCCAAAAGCTAA

>Glyma20g16880.3   sequence type=CDS   gene model=Glyma20g16880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGGCATTCCTGTTTCCACTCGTGCTACCTCAAGCCATCCAGATGCTTGTGAACATTTATCTGCGGAAGAGGAGCTTGCAGCTGAAGAGAGTCTTTCAATTTATTGCAAGCCTGTAGAACTTTACAACATTCTCCAGCGACGTGCCATGAGAAACCCATCATTCCTTCAGAGATGTTTGCACTACCGGATAAAGGCAAAGCACAAGAAGAGAATCCATATGGCAGTTTCCTTGACGAGGACTATAACTGAAAGCCAAAACGTGTTTCCCATGTCTATCTGTCTTGCAAGGCGGATTTCTGATCATGGAGCTTCAAGGCAAACCGCCATGTATCGAATTGGTCGGATTTTCATCTTCCGAAACTCCCCTGGAATTGATTTGAATACTCAGGTCCAGGCAAATTTTACACTCCCTGAAGTAAACAAGTTAGCTGAGGAAGCTAGATCTTGCTCACTTGATATCTTGTTTGTCAGCACTGCCACTGTGGGAAACTCACATCTATCATCTGGAGTCAATTCAAACTCTATGCCTTCGGATCTGAGTCATCTAGCTTTTTTTGAATCTGGAGAATACTGCCTTTGTGGGAAAGTGTCTTTAGAATCACTTTATATGGCTTGGGATTGTTTTCCGAATTTTCGTTTGGGACAGCGAGCAGAGATTATGTCAACTGTGGATTTGCTTCCGTGTATTCTGAAGTCTGATTTTCCAAATGATGATACAAGAATCTCCATTCAAGTTCCCTCTAATTTTGAGAATATGAGTACATCAAAGCAAGTACAAATCACAATTTCTGCTGAAGAGTTTGGGGCCAAAGAAAAATCTCCCTATCTTTCATATGCAGGCAGTGAAGTACCATCCTCATCATTATCTCACATGATCGGGTTGAGGGAAGGAAATGTAATGTTTAATTACAGGTATTACAATAATAAGTTGCAGAGGACAGAAGTCACCGAAGATTTCACTTGTCCATTTTGTTTGGTTAAATGCGCGTGTTTTAAGGGTCTAAGATGTCATTTGTCATCATCACATGATCTCTTCAACTTTGAATTTTGGGTATCAGATGAATGTCACGCTGTAAATGTGTCTGTGAAAAATGATATCTCGAGATCGGAGATTGTTTCTGATGATGTTGATCCAAGAGTGCAAACATTTTTCTTTTGTGGAAAGCCTCTAAAGCGTAGGACAACAGCAGACCAATCTTTGAAAAATGCAGTGGGCTTAGAGTCTTCCTTTCCTGCAGGAGGGACTGATATTTTGGAGAAGGATGATGGTATTTCTGCCACAATTATTCGATCACGTCCTGATCGAGACTCTGTTCAGTCAATGTCTGACTGTGATCAAGCAGTGCTTCAGTTTGCCAAGACAAGGAAGTTGTCAATTGAGCGTCCTGACCCACGAAACAGTACCTTCTTGAGGAAGCGACAATTTTTTCATTCACACAAAGCTCAGCCAATGGCAATTGAACAAGTTCTATCCGATAAAGATAGCGAAGATGAAGTTGATGATGATGTTGCCGATTTTGAAGATCGAAGGATGCTTGAAAATGTTGTTGATGTGAGCAATGATGAGAAGACTTTCATGCATATGTGGAACTCATTTGTTCGGAAGCATCGTGTGATTGCAGATGGTCACATTTCATGGGCATGTGAGGCTTTCTCAAAATTGCATGCACCTGAGTTTGTTCAATCTCCCTCACTGGCAGGGTGTTGGAGAATATTTATGGTCAAATTATACAATCATGGTCTTCTAGATGCTCGGACCATGAATGACTGTAATATTATTCTTGAGCAATACCAAAGGCAGAATTCAGATCCCAAAAGCTAA

>Glyma20g16880.2   sequence type=predicted peptide   gene model=Glyma20g16880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGIPVSTRATSSHPDACEHLSAEEELAAEESLSIYCKPVELYNILQRRAMRNPSFLQRCLHYRIKAKHKKRIHMAVSLTRTITESQNVFPMSICLARRISDHGASRQTAMYRIGRIFIFRNSPGIDLNTQVQANFTLPEVNKLAEEARSCSLDILFVSTATVGNSHLSSGVNSNSMPSDLSHLAFFESGEYCLCGKVSLESLYMAWDCFPNFRLGQRAEIMSTVDLLPCILKSDFPNDDTRISIQVPSNFENMSTSKQVQITISAEEFGAKEKSPYLSYAGSEVPSSSLSHMIGLREGNVMFNYRYYNNKLQRTEVTEDFTCPFCLVKCACFKGLRCHLSSSHDLFNFEFWVSDECHAVNVSVKNDISRSEIVSDDVDPRVQTFFFCGKPLKRRTTADQSLKNAVGLESSFPAGGTDILEKDDGISATIIRSRPDRDSVQSMSDCDQAVLQFAKTRKLSIERPDPRNSTFLRKRQFFHSHKAQPMAIEQVLSDKDSEDEVDDDVADFEDRRMLENVVDVSNDEKTFMHMWNSFVRKHRVIADGHISWACEAFSKLHAPEFVQSPSLAGCWRIFMVKLYNHGLLDARTMNDCNIILEQYQRQNSDPKS*

>Glyma20g16880.3   sequence type=predicted peptide   gene model=Glyma20g16880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGIPVSTRATSSHPDACEHLSAEEELAAEESLSIYCKPVELYNILQRRAMRNPSFLQRCLHYRIKAKHKKRIHMAVSLTRTITESQNVFPMSICLARRISDHGASRQTAMYRIGRIFIFRNSPGIDLNTQVQANFTLPEVNKLAEEARSCSLDILFVSTATVGNSHLSSGVNSNSMPSDLSHLAFFESGEYCLCGKVSLESLYMAWDCFPNFRLGQRAEIMSTVDLLPCILKSDFPNDDTRISIQVPSNFENMSTSKQVQITISAEEFGAKEKSPYLSYAGSEVPSSSLSHMIGLREGNVMFNYRYYNNKLQRTEVTEDFTCPFCLVKCACFKGLRCHLSSSHDLFNFEFWVSDECHAVNVSVKNDISRSEIVSDDVDPRVQTFFFCGKPLKRRTTADQSLKNAVGLESSFPAGGTDILEKDDGISATIIRSRPDRDSVQSMSDCDQAVLQFAKTRKLSIERPDPRNSTFLRKRQFFHSHKAQPMAIEQVLSDKDSEDEVDDDVADFEDRRMLENVVDVSNDEKTFMHMWNSFVRKHRVIADGHISWACEAFSKLHAPEFVQSPSLAGCWRIFMVKLYNHGLLDARTMNDCNIILEQYQRQNSDPKS*







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