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Report for Sequence Feature Glyma20g21082

Feature Type:gene_model
Chromosome:Gm20
Start:30059997
stop:30061296
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45650AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 6 | chr2:18804453-18806291 FORWARD LENGTH=252 SoyBaseE_val: 4.00E-18ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0048437GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ development SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF19Panther MADS BOX PROTEIN JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_Q8LLR1UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS-box protein 3 n=1 Tax=Vitis vinifera RepID=Q8LLR1_VITVI SoyBaseE_val: 3.00E-36ISS
UniRef100_UPI000233DD89UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DD89 related cluster n=1 Tax=unknown RepID=UPI000233DD89 SoyBaseE_val: 2.00E-87ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g21082 not represented in the dataset

Glyma20g21082 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g21082.1   sequence type=CDS   gene model=Glyma20g21082   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGTTGACTACCAAAACTATTGAGCAATACCATCGTAGCTCTTTTACTCCTCAAGACGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGATTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGGGAAGATGTTGGACCATTGAACATAAAGGAGTTGCAGAATCTTGAGAAACAGCTTGAAGGGTCTTCAGCACAACCAAGGCAAAGGAAGTGTTTGGGTGGTTCTTGTCTCGGTTTTGGAGGGATTCCAACCCCGGCGAGAATTTGGGAGGGAGTTGATTGTATAGTGGGGTTTTTTGCTTTAAGTGGTATACAGGTTTTTGGTTGGATGTTAATGATGTTGGGGTATGTTAGGGTAGTGAAGCTTTACTAG

>Glyma20g21082.1   sequence type=predicted peptide   gene model=Glyma20g21082   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVELTTKTIEQYHRSSFTPQDEHVECETQSWYQEVSKLKAKYDSLQRTQRHLLGEDVGPLNIKELQNLEKQLEGSSAQPRQRKCLGGSCLGFGGIPTPARIWEGVDCIVGFFALSGIQVFGWMLMMLGYVRVVKLY*







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