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SCN 42-1
Parent 1:Y23
Parent 2:Hartwig
Heritability:0.061
Num loci tested:82
Interval length:15
Interval LOD score:1.5
Trait name:Reaction to Heterodera glycines

Controlled vocabulary terms associated with the QTL
SourceAccession Number
Plant Trait OntologyTO:0000384
Gene OntologyGO:0009624

     
Other related QTL's
SCN 42-2
SCN 42-3
SCN 42-4

References for the QTL
Ariagada et al. 2012Bayesian mapping of quantitative trait loci (QTL) controlling soybean cyst nematode resistant 
Euph. 2012, 186(3):907-917

     
Maps containing SCN 42-1
MapLGStartEnd
GmComposite2003_A2 A250.7065.70See this QTL region in Sequence Browser

Loci positively associated with the QTL
Sat_162Phenotypic_R20.25
Sat_162Additive_effect-24.61

Population types used in identification of the QTL
F6:7 RIL

Parent trait values associated with the QTL
ParentTrait
Y23Susceptible
HartwigResistant

Loci associated with the QTL
Sat_162
Sat_157

Methods used to identify the QTL
Mapmaker/EXP 3.0
WinQTLCart 2.5
Bayesian interval mapping (BIM)

Comments about the QTL
Publication included Mean, Median, and Mode values for Heritability, Variance, and Additive Effect. Only Median value for each reported in SoyBase. See publication for additional details
The trait is resistance to Soybean Cyst Nematode ( SCN ) disease which is caused by the nematode Heterodera glycines. Publication measured resistance to SCN Race 3 using Female Index, which was defined as (#female cysts on RILs)/(#female cysts on Y23). See publication for additional details
Parent_1 was Y23, Parent_2 was Hartwig






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