SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research



Seed coat color 1-5
Parent 1:Kitakomachi
Parent 2:Koganejiro
Num loci tested:491
Interval length:19.3
Interval LOD score:4.57
Trait name:Seed coat color

SourceAccession Number
Plant Trait OntologyTO:0000190
Plant OntologyPO:0009088

     
Seed coat color 1-1
Seed coat color 1-2
Seed coat color 1-3
Seed coat color 1-4

pig4
Sd color 1-5

Githiri et al. 2007QTL Analysis of Low Temperature-Induced Browning in Soybean Seed Coats 
J. Hered. 2007, 98(4):360-366

     
This QTL could not be placed on the Composite genetic map. See comments below for more information.

The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
e12m34-8Parent_13.79 API
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
e12m34-8Parent_20.59 API
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
e12m34-8Phenotypic_R232.6
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
e12m34-8Favorable_allele_sourceKitakomachi
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
e12m34-8Additive_effect-1.27
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information.
LocusParameterValue
e12m34-8Dominance_effect0.22

F2

ParentTrait
KitakomachiSevere pigmentation from chilling
KoganejiroSlight pigmentation from chilling

Flowering date

MapMaker/EXP 3.0
QTL Cartographer 2.0
CIM

Parent 1 is Kitakomachi, Parent 2 is Koganejiro
The marker (e12m34-8; LG J) reported for this QTL is not on the SoyBase Composite genetic map. Thus the QTL does not appear in the map display. See the publication for additional details.
Publication used Average Pigmentation Index (API) that used the average pigmentation (0=no pigment to 4=heavy pigmented) of the seeds from flowers that were exposed 5-8 days after opening to chilling (15 degrees C, or 59 degrees F)






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo