Seed coat color 1-5
Parent 1: | Kitakomachi |
Parent 2: | Koganejiro |
Num loci tested: | 491 |
Interval length: | 19.3 |
Interval LOD score: | 4.57 |
Trait name: | Seed coat color |
Controlled vocabulary terms associated with the QTL
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Other related QTL's
Other names for the QTL
References for the QTL
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Maps containing Seed coat color 1-5
This QTL could not be placed on the Composite genetic map. See comments below for more information. |
Loci positively associated with the QTL
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information. |
Locus | Parameter | Value |
e12m34-8 | Parent_1 | 3.79 API |
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information. |
Locus | Parameter | Value |
e12m34-8 | Parent_2 | 0.59 API |
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information. |
Locus | Parameter | Value |
e12m34-8 | Phenotypic_R2 | 32.6 |
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information. |
Locus | Parameter | Value |
e12m34-8 | Favorable_allele_source | Kitakomachi |
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information. |
Locus | Parameter | Value |
e12m34-8 | Additive_effect | -1.27 |
The locus associated with this QTL could not be placed on the Composite genetic map. See comments below for more information. |
Locus | Parameter | Value |
e12m34-8 | Dominance_effect | 0.22 |
Population types used in identification of the QTL
Parent trait values associated with the QTL
Parent | Trait |
Kitakomachi | Severe pigmentation from chilling |
Koganejiro | Slight pigmentation from chilling |
Other QTLs studied
Methods used to identify the QTL
MapMaker/EXP 3.0 |
QTL Cartographer 2.0 |
CIM |
Comments about the QTL
Parent 1 is Kitakomachi, Parent 2 is Koganejiro |
The marker (e12m34-8; LG J) reported for this QTL is not on the SoyBase Composite genetic map. Thus the QTL does not appear in the map display. See the publication for additional details. |
Publication used Average Pigmentation Index (API) that used the average pigmentation (0=no pigment to 4=heavy pigmented) of the seeds from flowers that were exposed 5-8 days after opening to chilling (15 degrees C, or 59 degrees F) |
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA |
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