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Seed coat color 4-1
Parent 1:W05
Parent 2:C08
Interval length:2
Percent Variation Explained:78.53
Trait name:Seed coat color

Controlled vocabulary terms associated with the QTL
SourceAccession Number
Plant Trait OntologyTO:0000190
Plant OntologyPO:0009088

     
Other related QTL's
Salt tolerance
Total growth duration
Seed anthocyanin content
Trailing growth
Pod number
Seeds per plant
Nodule number
Pod color
Seed antioxidant content
Seed length to width ratio

References for the QTL
Qi et al. 2014bIdentification of a novel salt tolerance gene in wild soybean by whole-genome sequencing 
Nature Communications (2014) 5:4340

     
Maps containing Seed coat color 4-1
MapLGStartEnd
GmComposite2003_A2 A251.1053.10See this QTL region in Sequence Browser

Loci positively associated with the QTL
Gm08:7902342Parent_1Salt tolerant
Gm08:7902342Parent_2Salt intolerant

Population types used in identification of the QTL
RIL

Parent trait values associated with the QTL
ParentTrait
W05Salt tolerant
C08Salt intolerant

Loci associated with the QTL
Gm08:7902342

Methods used to identify the QTL
Kosambi
QTLCartographer

Comments about the QTL
Locus was approximately placed on the SoyBase Composite2003 genetic map by comparing the given base pair range in the Wm82.a2 genome, identifying the nearest genetically mapped markers on each side of the given range, and interpolating the markerŐs position on the genetic map to a similar relative position.






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