SoyBase Datastore Collections

All of the files housed by SoyBase are available at the SoyBase and LIS Datastore.

The Datastore is organized by Genus and species, with individual data collections under species directories for: genomes, annotations, expression, genetic data, markers, synteny, diversity, and others. Each collection contains a README file which describes that collection.

Collection synopses and links

• Glycine max
  max

  • annotations
    annotations

    58-161.gnm1.ann1.HJ1K

    Gene annotations for Glycine max accession 58-161 (SoyL04)

    Amsoy.gnm1.ann1.6S5P

    Gene annotations for Glycine max accession Amsoy (SoyC05)

    DongNongNo_50.gnm1.ann1.QSDB

    Gene annotations for Glycine max accession DongNongNo_50 (SoyC12)

    FengDiHuang.gnm1.ann1.P6HL

    Gene annotations for Glycine max accession FengDiHuang (SoyL07)

    FiskebyIII.gnm1.ann1.SS25

    Genome annotation files for Glycine max genotype Fiskeby III, Stupar et al. (2020); JGI name Fiskeby v1.1

    HanDouNo_5.gnm1.ann1.ZS7M

    Gene annotations for Glycine max accession HanDouNo_5 (SoyC09)

    Hefeng25_IGA1002.gnm1.ann1.320V

    Genome annotation files for cultivar Hefeng 25, Chu et al (2021)

    HeiHeNo_43.gnm1.ann1.PDXG

    Gene annotations for Glycine max accession HeiHeNo_43 (SoyC13)

    Huaxia3_IGA1007.gnm1.ann1.LKC7

    Genome annotation files for cultivar Huaxia3

    Hwangkeum.gnm1.ann1.1G4F

    Genome annotation files for Glycine max genotype Hwangkeum, Kim et al. (2021)

    JD17.gnm1.ann1.CLFP

    Annotation 1 for Glycine max accession Jidou 17 (JD17), genome assembly 1

    JiDouNo_17.gnm1.ann1.X5PX

    Gene annotations for Glycine max accession JiDouNo_17 (SoyC11)

    JinDouNo_23.gnm1.ann1.SGJW

    Gene annotations for Glycine max accession JinDouNo_23 (SoyC07)

    Jinyuan_IGA1006.gnm1.ann1.2NNX

    Genome annotation files for cultivar Jinyuan

    JuXuanNo_23.gnm1.ann1.H8PW

    Gene annotations for Glycine max accession JuXuanNo_23 (SoyC03)

    KeShanNo_1.gnm1.ann1.2YX4

    Gene annotations for Glycine max accession KeShanNo_1 (SoyC14)

    Lee.gnm1.ann1.6NZV

    Glycine max accession Lee genome annotation files; JGI name Lee v1.1

    Lee.gnm2.ann1.1FNT

    genome annotation of Glycine max Lee, genome assembly 2

    Lee.gnm3.ann1.ZYY3

    Annotation 1 for Glycine max accession Lee, genome assembly 3

    PI_398296.gnm1.ann1.B0XR

    Gene annotations for Glycine max accession PI_398296 (SoyL05)

    PI_548362.gnm1.ann1.LL84

    Gene annotations for Glycine max accession PI_548362 (SoyC10)

    QiHuangNo_34.gnm1.ann1.WHRV

    Gene annotations for Glycine max accession QiHuangNo_34 (SoyC08)

    ShiShengChangYe.gnm1.ann1.VLGS

    Gene annotations for Glycine max accession ShiShengChangYe (SoyL09)

    TieFengNo_18.gnm1.ann1.7GR4

    Gene annotations for Glycine max accession TieFengNo_18 (SoyC02)

    TieJiaSiLiHuang.gnm1.ann1.W70Z

    Gene annotations for Glycine max accession TieJiaSiLiHuang (SoyL08)

    TongShanTianEDan.gnm1.ann1.56XW

    Gene annotations for Glycine max accession TongShanTianEDan (SoyL03)

    WanDouNo_28.gnm1.ann1.NLYP

    Gene annotations for Glycine max accession WanDouNo_28 (SoyC04)

    Wenfeng7_IGA1001.gnm1.ann1.ZK5W

    Genome annotation files for cultivar Wenfeng 7

    Wm82.gnm1.ann1.DvBy

    Glycine max accession Williams genome annotation files; JGI name Glycine max v1.1

    Wm82.gnm2.ann1.RVB6

    Glycine max accession Williams genome annotation files; JGI name Wm82.a2.v1

    Wm82.gnm4.ann1.T8TQ

    Glycine max accession Williams genome annotation files; JGI name Wm82.a4.v1

    Wm82.gnm5.ann1.J7HW

    Annotation 1 for Glycine max accession Williams 82 (Wm82), genome assembly 5

    Wm82.gnm6.ann1.PKSW

    Annotation 1 Glycine max accession Williams 82 (ISU01) genome assembly v6; renamed from Wm82 ISU-01 v2.1; JGI name Wm82.a6.v1

    Wm82_IGA1008.gnm1.ann1.FGN6

    Genome annotation files for cultivar William 82

    Wm82_NJAU.gnm1.ann1.KM71

    Annotation 1 for Glycine max accession Williams 82 from Nanjing Agricultural University (Wm82-NJAU), genome assembly v1

    XuDouNo_1.gnm1.ann1.G2T7

    Gene annotations for Glycine max accession XuDouNo_1 (SoyC01)

    YuDouNo_22.gnm1.ann1.HCQ1

    Gene annotations for Glycine max accession YuDouNo_22 (SoyC06)

    Zh13.gnm1.ann1.8VV3

    Genome annotation files for cultivar Zhonghuang 13, Shen et al. (2018)

    Zh13.gnm2.ann1.FJ3G

    Genome annotation files for cultivar Zhonghuang 13, Shen et al. (2019)

    Zh13_IGA1005.gnm1.ann1.87Z5

    Genome annotation files for cultivar Zhonghuang 13

    Zh35_IGA1004.gnm1.ann1.RGN6

    Genome annotation files for cultivar Zhonghuang 35, Chu et al. (2021)

    ZhangChunManCangJin.gnm1.ann1.7HPB

    Gene annotations for Glycine max accession ZhangChunManCangJin (SoyL06)

    Zhutwinning2.gnm1.ann1.ZTTQ

    Gene annotations for Glycine max accession Zhutwinning2 (SoyL01)

    ZiHuaNo_4.gnm1.ann1.FCFQ

    Gene annotations for Glycine max accession ZiHuaNo_4 (SoyL02)

  • diversity
    diversity

    Wm82.gnm1.div.ContrerasSoto_Mora_2017

    Haplotype information for 169 Brazilian soybean cultivars genotyped with the 6K SNPchip.

    Wm82.gnm1.div.Hu_Zhang_2020

    Variant information for 96 Glycine soja accessions, genotyped using the NJAU 335K SoySNP array, provided by Guizhen Kan.

    Wm82.gnm1.div.Song_Hyten_2015

    VCF, HapMap, and Flapjack files containing genotype information of the whole U.S. soybean germplasm collection using the SoySNP50K BeadChip.

    Wm82.gnm1.div.Song_Wei_2015

    The polymorphism information of INDELS and SNPs between Hedou12 and Wm82.

    Wm82.gnm1.div.Song_Yan_2017

    Haplotypes of SoyNAM parents and progeny with respect to Williams 82 genome assembly gnm1.

    Wm82.gnm1.div.Wang_Jiao_2016

    Variant information in vcf format for 367 Chinese soybean accessions using the NJAU 355K SoySNP array, provided by Dr. Jiao Wang.

    Wm82.gnm1.div.Zhou_Jiang_2015

    Resequencing information for 302 wild and cultivated soybean accessions.

    Wm82.gnm2.div.Jeong_Moon_2019

    Variant information for 4234 soybean accessions (Glycine max and Glycine soja) genotyped with the Axiom SoyaSNP array containing 180,961 SNPs.

    Wm82.gnm2.div.Lam_Xu_2010

    VCF file containing genotype information for 31 wild and cultivated soybeans received from Meng Ni, Tin Hang, and Hon-Ming Lam.

    Wm82.gnm2.div.Lee_Jeong_2015

    Text, VCF, HapMap, and Flapjack file containing genotype information for 222 Korean accessions.

    Wm82.gnm2.div.Liu_Shi_2025

    Predicted SNP effects relative to genes in Williams 82 gnm2 (Wm82.a2.v1).

    Wm82.gnm2.div.Song_Hyten_2015

    VCF, HapMap, and Flapjack files containing genotype information of the whole U.S. soybean germplasm collection using the SoySNP50K BeadChip.

    Wm82.gnm2.div.Song_NAM_2021a

    Imputed genotypes for 5176 Nested Association Mapping RILs relative to 40 NAM parental genotypes, genotyped using the SoySNP50K and SoyNAM6K assays. These data sets report alleles at 29,417 SNP positions.

    Wm82.gnm2.div.Song_NAM_2021b

    Imputed genotypes for 5176 Nested Association Mapping RILs relative to 40 NAM parental genotypes, genotyped with WGS and the SoySNP50K and SoyNAM6K assays. These data sets report alleles at 423,419 SNP positions.

    Wm82.gnm2.div.Song_Yan_2017

    Haplotypes of SoyNAM parents and progeny with respect to Williams 82 gnm2.

    Wm82.gnm2.div.Torkamaneh_Laroche_2017

    Resequencing information for 102 Canadian soybean accessions.

    Wm82.gnm2.div.Torkamaneh_Laroche_2019

    HapMap Data, GmHapMap, for 1007 accession of Glycine max and Glycine soja, from Torkamaneh et al. (2019)

    Wm82.gnm2.div.Valliyodan_Brown_2021

    Variant information for 481 soybean accessions (Glycine max and Glycine soja), provided by Babu Valliyodan and Henry Nguyen, as part of the United Soybean Board project to genotype and characterize diverse accessions.

    Wm82.gnm2.div.Wei_Mesquita_2017

    VCF file containing GBS information for 374 U.S. and Brazilian accessions against 68301 SNPs.

    Wm82.gnm2.div.Wickland_Battu_2017

    VCF files containing genotype information for 3 populations of soybean produced by GB-eaSy.

    Wm82.gnm2.div.Zhang_Jiang_2020

    Variant information for 1,556 resequenced soybean accessions Glycine max and Glycine soja, provided by Yong-Qiang An and Rick Meyer (Zhang et al., 2022), relative to Wm82 assembly 2.

    Wm82.gnm2.div.dosSantos_Valliyodan_2016

    VCF and HapMap file containing genotype information for 28 Brazilian soybean accessions.

    Wm82.gnm4.div.Song_Hyten_2015

    VCF and HapMap files containing genotype information of the whole U.S. soybean germplasm collection using the SoySNP50K BeadChip.

  • expression
    expression

    Wm82.gnm2.ann1.expr.Wm82.Libault_Farmer_2010

    Soybean gene expression atlas from 14 conditions (Libault et al., 2010).

    Wm82.gnm6.ann1.expr.Magellan.Pelaez-Vico_Sinha_2023

    Combined phenotypic and transcriptomic analysis of soybean plants subjected to multifactorial stress combination (Pelaez-Vico et al.)

    Wm82.gnm6.ann1.expr.Wm82.Chen_Lin_2021

    Gene Expression Changes in the Development of the Soybean Seed-Heart Stage.

    Wm82.gnm6.ann1.expr.Wm82.Chen_Lin_2021_2

    Gene Expression Changes in the Development of the Soybean Seed-Globular Stage.

    Wm82.gnm6.ann1.expr.Wm82.Chen_Lin_2021_3

    Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage.

    Wm82.gnm6.ann1.expr.Wm82.Libault_Farmer_2010

    Time-series transcriptomic data with Bradyrhizobium japonicum infection and mock inoculation

    Wm82.gnm6.ann1.expr.Wm82.Sreedasyam_Plott_2023

    Transcriptome sequencing as part of the JGI Flagship Plant Gene Atlas Inititative

    Wm82.gnm6.ann1.expr.mixed.Kour_Boone_2014

    Expression profiling by high throughput sequencing

  • gene_functions
    gene_functions

  • genomes
    genomes

    58-161.gnm1.BW8J

    Genome assembly for Glycine max accession 58-161 (SoyL04)

    Amsoy.gnm1.TYYG

    Genome assembly for Glycine max accession Amsoy (SoyC05)

    DongNongNo_50.gnm1.XRTN

    Genome assembly for Glycine max accession DongNongNo_50 (SoyC12)

    FengDiHuang.gnm1.YYLM

    Genome assembly for Glycine max accession FengDiHuang (SoyL07)

    FiskebyIII.gnm1.F177

    Glycine max genotype Fiskeby III genome assembly 1; JGI name Fiskeby v1.1

    HanDouNo_5.gnm1.11MF

    Genome assembly for Glycine max accession HanDouNo_5 (SoyC09)

    Hefeng25_IGA1002.gnm1.L69T

    Genome assembly files for cultivar Hefeng 25 (Hefeng25_IGA1002 in publication; WHFS_GmHF25_1.0 in the GenBank assembly record)

    HeiHeNo_43.gnm1.FV4H

    Genome assembly for Glycine max accession HeiHeNo_43 (SoyC13)

    Huaxia3_IGA1007.gnm1.RGGN

    Genome assembly files for cultivar Huaxia3 (Huaxia3_IGA1007 in publication; WHFS_GmHX3_1.0 in the GenBank assembly record)

    Hwangkeum.gnm1.4S83

    Glycine max genotype Hwangkeum genome assembly v1.0

    JD17.gnm1.TW7L

    Glycine max accession Jidou 17 (JD17), genome assembly 1

    JiDouNo_17.gnm1.MRYM

    Genome assembly for Glycine max accession JiDouNo_17 (SoyC11)

    JinDouNo_23.gnm1.GBYD

    Genome assembly for Glycine max accession JinDouNo_23 (SoyC07)

    Jinyuan_IGA1006.gnm1.LXM0

    Genome assembly files for cultivar Jinyuan (Jinyuan_IGA100 in the publication; 6HFS_GmJY_1.0 in the GenBank assembly record)

    JuXuanNo_23.gnm1.WC57

    Genome assembly for Glycine max accession JuXuanNo_23 (SoyC03)

    KeShanNo_1.gnm1.3TDD

    Genome assembly for Glycine max accession KeShanNo_1 (SoyC14)

    Lee.gnm1.BXNC

    Glycine max accession Lee Genome assembly 1; JGI name Lee v1.1

    Lee.gnm2.K7BV

    Glycine max genotype Lee genome assembly v2.0

    Lee.gnm3.VG1C

    Glycine max accession Lee, genome assembly 3

    PI_398296.gnm1.D07C

    Genome assembly for Glycine max accession PI_398296 (SoyL05)

    PI_548362.gnm1.V9S7

    Genome assembly for Glycine max accession PI_548362 (SoyC10)

    QiHuangNo_34.gnm1.MB9G

    Genome assembly for Glycine max accession QiHuangNo_34 (SoyC08)

    ShiShengChangYe.gnm1.MC01

    Genome assembly for Glycine max accession ShiShengChangYe (SoyL09)

    TieFengNo_18.gnm1.BW65

    Genome assembly for Glycine max accession TieFengNo_18 (SoyC02)

    TieJiaSiLiHuang.gnm1.W9PV

    Genome assembly for Glycine max accession TieJiaSiLiHuang (SoyL08)

    TongShanTianEDan.gnm1.B4R6

    Genome assembly for Glycine max accession TongShanTianEDan (SoyL03)

    WanDouNo_28.gnm1.ZRP2

    Genome assembly for Glycine max accession WanDouNo_28 (SoyC04)

    Wenfeng7_IGA1001.gnm1.L0QH

    Genome assembly files for cultivar Wenfeng 7 (Wenfeng7_IGA1001 in publication; WHFS_GmWF7_1.0 in the GenBank assembly record); Chu et al. (2021)

    Wm82.gnm1.FCtY

    Glycine max accession Williams genome assembly v1.0; JGI name Glycine max v1.1

    Wm82.gnm2.DTC4

    Glycine max accession Williams 82 genome assembly v2.0; JGI name Wm82.a2.v1

    Wm82.gnm4.4PTR

    Glycine max accession Williams 82 genome assembly v4.0; JGI name Wm82.a4.v1

    Wm82.gnm5.NRKG

    Glycine max accession Williams 82 (Wm82), genome assembly 5

    Wm82.gnm6.S97D

    Glycine max accession Williams 82 (ISU01) genome assembly v6; renamed from Wm82 ISU-01 v2.1; JGI name Wm82.a6.v1

    Wm82_IGA1008.gnm1.5CQQ

    Genome assembly files for cultivar Williams 82 (Wm82_IGA1008 in publication; WHFS_GmW82_1.0 in the GenBank assembly record)

    Wm82_NJAU.gnm1.N4GV

    Glycine max accession Williams 82 from Nanjing Agricultural University (Wm82-NJAU), genome assebly v1

    XuDouNo_1.gnm1.0GWH

    Genome assembly for Glycine max accession XuDouNo_1 (SoyC01)

    YuDouNo_22.gnm1.T2VD

    Genome assembly for Glycine max accession YuDouNo_22 (SoyC06)

    Zh13.gnm1.N6C8

    Genome assembly files for cultivar Zhonghuang 13, Shen et al. (2018)

    Zh13.gnm2.LV9P

    Genome assembly version 2 files for cultivar Zhonghuang 13, Shen et al. (2019)

    Zh13_IGA1005.gnm1.FRXQ

    Genome assembly files for cultivar Zhonghuang 13 (Zh13_IGA1005 in publication; WHFS_GmZH13_1.0 in the GenBank assembly record)

    Zh35_IGA1004.gnm1.DBYJ

    Genome assembly files for cultivar Zhonghuang 35 (Zh35_IGA1004 in publication; WHFS_GmZH35_1.0 in the GenBank assembly record)

    ZhangChunManCangJin.gnm1.FC4Q

    Genome assembly for Glycine max accession ZhangChunManCangJin (SoyL06)

    Zhutwinning2.gnm1.GR6N

    Genome assembly for Glycine max accession Zhutwinning2 (SoyL01)

    ZiHuaNo_4.gnm1.HN60

    Genome assembly for Glycine max accession ZiHuaNo_4 (SoyL02)

  • gwas
    gwas

    mixed.gwas.Bandillo_Jarquin_2015

    GWAS of soybean seed protein and oil, using 12,000 accessions from the USDA soybean collection and the SoySNP50K BeadChip.

    mixed.gwas.Bao_Kurle_2015

    GWAS of soybean sudden death syndrome (SDS), based on 282 breeding lines, genotyped with the 1536-SNP USLP1.0 chip.

    mixed.gwas.Bao_Vuong_2014

    282 representative accessions from the University of Minnesota soybean breeding program using a genome-wide panel of 1536 single nucleotide polymorphism (SNP) markers and evaluated plant responses to SCN HG type 0

    mixed.gwas.Cao_Li_2017

    GWAS and QTL study of soybean seed oil, conducted on 279 lines from a Chinese breeding population, genotyped with 59,845 SNPs.

    mixed.gwas.Chang_Brown_2016

    GWAS of Tobacco ringspot virus (TRSV) conducted on 19,652 lines in the USDA Soybean Collection, genotyped with the SoySNP50K BeadChip.

    mixed.gwas.Che_Liu_2017

    GWAS of Soybean mosaic virus (SMV), conducted on 165 lines from parents with differing susceptibility, genotyped with the NJAU 355K Soy SNP assay.

    mixed.gwas.Dhanapal_Ray_2016

    GWAS of soybean chlorophyll traits based on canopy spectral reflectance and leaf extracts.

    mixed.gwas.Fang_Ma_2017

    GWAS of 84 agronomic traits, conducted on 809 soybean accessions, with genotyping by resequencing.

    mixed.gwas.Han_Zhao_2015

    440 soybean landraces and elite cultivars were screened for resistance to SCN HG Type 0 and HG Type 1.2.3.5.7; GWAS relative to Wm82.gnm2

    mixed.gwas.Kim_Kim_2020

    GWAS study of control of flowering time in soybean, genotyped with the 180k Axiom SoyaSNP array.

    mixed.gwas.Li_Zhao_2019

    GWAS study of soybean seed protein and oil, conducted on 298 accessions, genotyped with a panel of 1536 SNPs.

    mixed.gwas.Mamidi_Chikara_2011

    GWAS study of iron deficiency chlorosis (IDC) in soybean, conducted on two populations (n=143, n=141), genotyped with the 1536 SNP USLP1 array.

    mixed.gwas.Meng_He_2016

    Utilizing an innovative GWAS in CSLRP, 44 QTL 199 alleles with 72.2 % contribution to SIFC variation were detected and organized into a QTL-allele matrix for cross design and gene annotation.

    mixed.gwas.Moellers_Singh_2017

    GWAS study of Sclerotinia stem rot (SSR) in soybean, conducted on 466 accessions, genotyped with the SoySNP50K BeadChip.

    mixed.gwas.Sonah_ODonoughue_2015

    GWAS study of eight traits in soybean, conducted on 139 accessions, genotyped using GBS-derived markers.

    mixed.gwas.Tran_Steketee_2019

    GWAS of Soybean Cyst Nematode (SCN) (Heterodera glycines) resistance for Soybean, relative to the Williams 82 assembly 2.0.

    mixed.gwas.Vuong_Sonah_2015

    GWAS of Soybean Cyst Nematode (SCN) (Heterodera glycines) resistance for Soybean, relative to the Wm82.gnm2 assembly (originally reported with respect to Wm82.gnm1)

    mixed.gwas.Wang_Chu_2016

    GWAS study of domestication-related traits in soybean, conducted on 105 wild and 262 cultivated soybeans, genotyped using the NJAU 355K SoySNP array.

    mixed.gwas.Yan_Hofmann_2017

    GWAS study of seed weight in soybean, conducted on 166 from the USDA soybean collection, genotyped using the SoySNP50K BeadChip.

    mixed.gwas.Zhang_Hao_2015

    GWAS study of architecture and yield-related traits in soybean, conducted on 219 accessions, genotyped using the 1536-SNP USLP1 array.

    mixed.gwas.Zhang_Li_2016

    GWAS of soybean cyst nematode (SCN) resistance for wild soybean bean, relative to the soybean genome Wm82.gnm2

    mixed.gwas.Zhang_Song_2015

    GWAS study of flowering time, maturity dates and plant height in soybean, conducted on 309 soybean accessions, genotyped using the SoySNP50K BeadChip.

    mixed.gwas.Zhang_Song_2016

    GWAS study of seed weight in soybean, conducted on 309 soybean accessions, genotyped using the SoySNP50K BeadChip.

    mixed.gwas.Zhao_Teng_2017

    The aim of the present study was to investigate the genome-wide genetic architecture of resistance to SCN HG Type 2.5.7 (race 1) in landrace and elite cultivated soybeans.

  • maps
    maps

    mixed.map.GmComposite1999

    Consensus genetic map GmComposite1999 from SoyBase.

    mixed.map.GmComposite2003

    Consensus genetic map GmComposite2003 from SoyBase.

    mixed.map.GmFeChlorosis

    Consensus genetic map GmFeChlorosis from SoyBase.

    mixed.map.GmFeChlorosis2

    Consensus genetic map GmFeChlorosis2 from SoyBase.

    mixed.map.GmRAPD-SIU

    Consensus genetic map GmRAPD-SIU from SoyBase.

    mixed.map.GmRAPD-Sclero

    Consensus genetic map GmRAPD-Sclero from SoyBase.

    mixed.map.GmRFLP-CEW

    Consensus genetic map GmRFLP-CEW from SoyBase.

    mixed.map.GmRFLP-CEW2

    Consensus genetic map GmRFLP-CEW2 from SoyBase.

    mixed.map.GmRFLP-CEW3

    Consensus genetic map GmRFLP-CEW3 from SoyBase.

    mixed.map.GmRFLP-Chiba

    Consensus genetic map GmRFLP-Chiba from SoyBase.

    mixed.map.GmRFLP-Chiba2

    Consensus genetic map GmRFLP-Chiba2 from SoyBase.

    mixed.map.GmRFLP-GA1996a

    Consensus genetic map GmRFLP-GA1996a from SoyBase.

    mixed.map.GmRFLP-GA1996b

    Consensus genetic map GmRFLP-GA1996b from SoyBase.

    mixed.map.GmRFLP-GA1998

    Consensus genetic map GmRFLP-GA1998 from SoyBase.

    mixed.map.GmRFLP-JPT

    Consensus genetic map GmRFLP-JPT from SoyBase.

    mixed.map.GmRFLP-KGL

    Consensus genetic map GmRFLP-KGL from SoyBase.

    mixed.map.GmRFLP-USDAARS-RCS

    Consensus genetic map GmRFLP-USDAARS-RCS from SoyBase.

    mixed.map.GmSCN

    Consensus genetic map GmSCN from SoyBase.

    mixed.map.GmSSR-MO

    Consensus genetic map GmSSR-MO from SoyBase.

    mixed.map.GmSSR-SIU

    Consensus genetic map GmSSR-SIU from SoyBase.

    mixed.map.GmSSR-Sclero

    Consensus genetic map GmSSR-Sclero from SoyBase.

    mixed.map.GmSSR-Utah

    Consensus genetic map GmSSR-Utah from SoyBase.

    mixed.map.GmSSR-Utah2

    Consensus genetic map GmSSR-Utah2 from SoyBase.

    mixed.map.GmSSR-Utah3

    Consensus genetic map GmSSR-Utah3 from SoyBase.

    mixed.map.GmUSDA1997

    Consensus genetic map GmUSDA1997 from SoyBase.

    mixed.map.GmUtah1996

    Consensus genetic map GmUtah1996 from SoyBase.

  • markers
    markers

    FiskebyIII.gnm1.mrk.SoySNP50K

    SoySNP50K is an Illumina Infinium II BeadChip that contains over 50,000 SNPs from soybean useful for genotyping a wide variety of cultivated and wild soybean accessions.

    Wm82.gnm1.mrk.BARCSOYSSR

    BARCSOYSSR contains 33,065 locus-specific SSR markers with di-, tri-, and tetranucleotide repeats of five or more.

    Wm82.gnm1.mrk.Li_Guo_2016

    59,845 single-nucleotide polymorphisms identified from re-sequencing of 279 accessions from Yangtze-Huai soybean breeding germplasm.

    Wm82.gnm1.mrk.SoySNP50K

    SoySNP50K is an Illumina Infinium II BeadChip that contains over 50,000 SNPs from soybean useful for genotyping a wide variety of cultivated and wild soybean accessions.

    Wm82.gnm1.mrk.SoySNP6K

    Illumina Infinium SoySNP6K BeadChip

    Wm82.gnm1.mrk.SoySSR

    This marker set contains SSRs developed and published by Cregan, et al. in 1999, with names starting with Satt or Sat_.

    Wm82.gnm1.mrk.Zhao_Teng_2017

    SLAF-seq markers associated with resistance to soybean cyst nematode (SCN) HG type 2.5.7, with respect to Wm82 gnm1 coordinates.

    Wm82.gnm2.mrk.1536_USLP1

    Universal Soy Linkage Panel (USLP 1.0) contains 1536 SNPs selected based on even distribution throughout each of the 20 consensus linkage groups and to have a broad range of allele frequencies in diverse germplasm.

    Wm82.gnm2.mrk.BARCSOYSSR

    BARCSOYSSR contains 33,065 locus-specific SSR markers with di-, tri-, and tetranucleotide repeats of five or more.

    Wm82.gnm2.mrk.Fang_Ma_2017

    GWAS of 84 agronomic traits, conducted on 809 soybean accessions, with genotyping by resequencing.

    Wm82.gnm2.mrk.Han_Zhao_2015

    SNP markers generated Specific Locus Amplified Fragment Sequencing (SLAF-seq) approach, and showing association with resistance against two soybean cyst nematode types.

    Wm82.gnm2.mrk.Li_Zhao_2019

    12,072 SNPs from Li, Zhao, et al. (2019), a seed protein and oil study.

    Wm82.gnm2.mrk.Meng_He_2016

    GWAS study of seed isoflavone content (SIFC), conducted on 366 landraces, genotyped with 116,769 RAD-Seq markers.

    Wm82.gnm2.mrk.NJAU355K

    NJAU 355K SoySNP array used to study soybean domestication in Wang, et al. (2016).

    Wm82.gnm2.mrk.Sonah_ODonoughue_2015

    GWAS study of eight traits in soybean, conducted on 139 accessions, genotyped using GBS-derived markers.

    Wm82.gnm2.mrk.SoySNP50K

    SoySNP50K is an Illumina Infinium II BeadChip that contains over 50,000 SNPs from soybean useful for genotyping a wide variety of cultivated and wild soybean accessions.

    Wm82.gnm2.mrk.SoySNP6K

    Illumina Infinium SoySNP6K BeadChip

    Wm82.gnm2.mrk.SoySSR

    This marker set contains SSRs developed and published by Cregan, et al. in 1999, with names starting with Satt or Sat_.

    Wm82.gnm2.mrk.SoyaSNP180K

    Axiom SoyaSNP180K array with 180,981 SNPs developed by Lee, et al. (2015).

    Wm82.gnm2.mrk.Tran_Steketee_2019

    Diverse soybean accessions (462) were screened for resistance to SCN and genotyped using SoySNP50K Infinium Chip and a set of 3 funtional KASP SNP markers, identifying both 88788-type and Peking-type resistance.

    Wm82.gnm2.mrk.Vuong_Sonah_2015

    Markers associated with Soybean Cyst Nematode (SCN) resistance in Soybean, relative to the Wm82.gnm2 assembly. Markers derive from the SoySNP50K set.

    Wm82.gnm2.mrk.Zhao_Teng_2017

    SLAF-seq markers associated with resistance to soybean cyst nematode (SCN) HG type 2.5.7, with respect to Wm82 gnm2 coordinates (derived via sequence homology, from markers originally with positions in Wm82 gnm1).

    Wm82.gnm4.mrk.SoySNP50K

    SoySNP50K is an Illumina Infinium II BeadChip that contains over 50,000 SNPs from soybean useful for genotyping a wide variety of cultivated and wild soybean accessions.

    Wm82.gnm6.mrk.SoySNP50K

    SoySNP50K is an Illumina Infinium II BeadChip that contains over 50,000 SNPs from soybean useful for genotyping a wide variety of cultivated and wild soybean accessions.

  • methylation
    methylation

    Wm82.gnm1.met.Kim_Baidouri_2015

    Methylation depths relative to the Glycine max Williams82 assembly v1 (Wm82.gnm1)

    Wm82.gnm2.met.Kim_Baidouri_2015

    Methylation depths relative to the Glycine max Williams82 assembly v2 (Wm82.gnm2)

  • pangenomes
    pangenomes

    Lee.gnm1.pan.96SR

    Genomic sequence and SNP variants present in 1110 accessions of Glycine max and Glycine soja but not present in the reference genome assembly of G. max Lee.

    Wm82.gnm4.pan.W46N

    Genomic sequence and gene variants present in 204 diverse accessions of Glycine max but not present in the reference assembly G. max Williams 82 v4. From Torkamaneh, Lemay, and Belzile, 2021.

  • qtl
    qtl

    0518BW-8_x_0734BW-1.qtl.Oyoo_Benitez_2011

    QTL Analysis of Soybean Seed Coat Discoloration Associated with II TT Genotype

    93705KS4895_x_Jackson.qtl.Hwang_King_2015

    Confirmation of delayed canopy wilting QTLs from multiple soybean mapping populations.

    A5403_x_Archer.qtl.Cornelious_Chen_2005

    Identification of QTLs Underlying Water-Logging Tolerance in Soybean

    A81356022_x_A81356022.qtl.Keim_Diers_1990

    RFLP mapping in soybean: association between marker loci and variation in quantitative traits.

    A81356022_x_PI468916.qtl.Diers_Cianzio_1992

    Possible identification of quantitative trait loci affecting iron efficiency in soybean

    A81356022_x_PI468916.qtl.Diers_Keim_1992

    RFLP analysis of soybean seed protein and oil content

    A81356022_x_PI468916.qtl.Diers_Shoemaker_1992

    Restriction fragment length polymorphism analysis of soybean fatty acid content

    A81356022_x_PI468916.qtl.Keim_Diers_1990

    Genetic analysis of soybean hard seededness with molecular markers

    A95-684043_x_LS94-3207.qtl.Swaminathan_Abeysekara_2016

    Quantitative trait loci underlying host responses of soybean to Fusarium virguliforme toxins that cause foliar sudden death syndrome

    A95-684043_x_LS98-0582.qtl.Swaminathan_Abeysekara_2018

    Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations

    A96-492058_x_A97-775026.qtl.Hoeck_2002

    Molecular marker analysis of seed size in soybean

    AC756_x_RCATAngora.qtl.Primomo_Poysa_2006

    Mapping QTL for Individual and Total Isoflavone Content in Soybean Seeds

    AGSBoggs-RR_x_CX1834-1-2.qtl.Walker_Scaboo_2006

    Genetic Mapping of Loci Associated with Seed Phytic Acid Content in CX1834‐1‐2 Soybean

    Anoka_x_A7.qtl.Lin_Baumer_2000

    Nutrient solution screening of Fe chlorosis resistance in soybean evaluated by molecular characterization

    Anoka_x_A7.qtl.Peiffer_King_2012

    Identification of Candidate Genes Underlying an Iron Efficiency Quantitative Trait Locus in Soybean

    Archer_x_Minsoy.qtl.VanToai_St.-Martin_2001

    Identification of a QTL Associated with Tolerance of Soybean to Soil Waterlogging

    BARC-8_x_Garimpo.qtl.Vieira_Oliveira_2006

    Use of the QTL approach to the study of soybean trait relationships in two populations of recombinant inbred lines at the F7 and F8 generations

    BD2_x_BX10.qtl.Liang_Cheng_2010a

    QTL analysis of root traits as related to phosphorus efficiency in soybean

    BD2_x_BX10.qtl.Liang_Cheng_2010b

    QTL analysis of root traits as related to phosphorus efficiency in soybean

    BSR101_x_LG82-8379.qtl.Kabelka_Diers_2004

    Putative Alleles for Increased Yield from Soybean Plant Introductions

    BSR101_x_PI437654.qtl.Klos_Paz_2000

    Molecular Markers Useful for Detecting Resistance to Brown Stem Rot in Soybean

    Bell_x_Colfax.qtl.Glover_Wang_2004

    Near Isogenic Lines Confirm a Soybean Cyst Nematode Resistance Gene from PI 88788 on Linkage Group J

    Bell_x_Colfax.qtl.Patzoldt_Grau_2005

    Localization of a Quantitative Trait Locus Providing Brown Stem Rot Resistance in the Soybean Cultivar Bell

    BenningPI595645_x_DanbaekkongPI619083.qtl.Warrington_Abdel-Haleem_2015

    QTL for seed protein and amino acids in the Benning × Danbaekkong soybean population

    BenningPI595645_x_PI416937.qtl.Abdel-Haleem_Lee_2011

    Identification of QTL for increased fibrous roots in soybean

    BenningPI595645_x_PI416937.qtl.Carpentieri-Pipolo_Pipolo_2012

    Identification of QTLs associated with limited leaf hydraulic conductance in soybean

    Benning_x_PI416937.qtl.Abdel-Haleem_Carter_2012

    Mapping of quantitative trait loci for canopy-wilting trait in soybean (Glycine max L. Merr)

    Birsasoya-1_x_JS71-05.qtl.Singh_Raipuria_2008

    SSR markers associated with seed longevity in soybean

    Bogao_x_Nannong94-156.qtl.Jun_Freewalt_2014

    Identification of novel QTL for leaf traits in soybean

    Bossier_x_Embrapa20.qtl.Santos_Geraldi_2013

    Mapping of QTLs associated with biological nitrogen fixation traits in soybean

    CNS_x_PI230977.qtl.Tamulonis_Luzzi_1997a

    DNA Markers Associated with Resistance to Javanese Root‐Knot Nematode in Soybean

    CNS_x_PI230977.qtl.Tamulonis_Luzzi_1997b

    RFLP Mapping of Resistance to Southern Root‐Knot Nematode in Soybean

    CSSL3228_x_NN1138D2.qtl.Zhang_Wang_2018

    Combining QTL-seq and linkage mapping to fine map a wild soybean allele characteristic of greater plant height

    CX1834-1-2_x_5601T.qtl.Scaboo_Pantalone_2009

    Confirmation of Molecular Markers and Agronomic Traits Associated with Seed Phytate Content in Two Soybean RIL Populations

    CX1834-1-6_x_V99-3337.qtl.Gao_Biyashev_2008

    Validation of Low-Phytate QTLs and Evaluation of Seedling Emergence of Low-Phytate Soybeans

    Chamame_x_Laco-1.qtl.Juwattanasomran_Somta_2012

    Identification of a new fragrance allele in soybean and development of its functional marker

    Charleston_x_DongNong594.qtl.Teng_Han_2009

    QTL analyses of seed weight during the development of soybean (Glycine max L. Merr.)

    Charleston_x_DongNong594.qtl.Yang_Xin_2013

    Identification of QTLs for seed and pod traits in soybean and analysis for additive effects and epistatic effects of QTLs among multiple environments.

    Charleston_x_Dongnong.qtl.Qi_Wu_2011

    Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes

    Charleston_x_Dongnong594.qtl.Qi_Hou_2014

    Identification of quantitative trait loci (QTLs) for seed protein concentration in soybean and analysis for additive effects and epistatic effects of QTLs under multiple environments

    Charleston_x_Dongnong594.qtl.Sun_Li_2006

    Quantitative trait loci analysis for the developmental behavior of Soybean (Glycine max L. Merr.)

    Charleston_x_Dongnong594.qtl.Sun_Pan_2012

    Multi-environment mapping and meta-analysis of 100-seed weight in soybean

    Cobb_x_PI171451.qtl.Rector_All_1999

    Quantitative Trait Loci for Antixenosis Resistance to Corn Earworm in Soybean

    Cobb_x_PI229358.qtl.Narvel_Walker_2001

    A Retrospective DNA Marker Assessment of the Development of Insect Resistant Soybean

    Cobb_x_PI229358.qtl.Rector_All_1998

    Identification of molecular markers linked to quantitative trait loci for soybean resistance to corn earworm

    Cobb_x_PI229358.qtl.Rector_All_2000

    Quantitative Trait Loci for Antibiosis Resistance to Corn Earworm in Soybean

    Conrad_x_Harosoy.qtl.Burnham_Dorrance_2003

    Quantitative Trait Loci for Partial Resistance to Phytophthora sojae in Soybean

    Conrad_x_Hefeng25.qtl.Mideros_Nita_2007

    Characterization of Components of Partial Resistance, Rps2, and Root Resistance to Phytophthora sojae in Soybean

    Conrad_x_OX760-6-1.qtl.Han_Teng_2008

    Mapping QTL tolerance to Phytophthora root rot in soybean using microsatellite and RAPD/SCAR derived markers

    Conrad_x_OX760-6-1.qtl.Weng_Yu_2007

    A quantitative trait locus influencing tolerance to Phytophthora root rot in the soybean cultivar ‘Conrad’

    Conrad_x_Sloan.qtl.Ellis_Wang_2012

    Identification of Soybean Genotypes Resistant toFusarium graminearumand Genetic Mapping of Resistance Quantitative Trait Loci in the Cultivar Conrad

    Conrad_x_Sloan.qtl.Wang_St.-Martin_2012

    Comparison of Phenotypic Methods and Yield Contributions of Quantitative Trait Loci for Partial Resistance toPhytophthora sojaein Soybean

    Conrad_x_Sloan.qtl.Wang_Waller_2010

    Analysis of Genes Underlying Soybean Quantitative Trait Loci Conferring Partial Resistance to Phytophthora sojae

    Conrad_x_Sloan.qtl.Wang_Wijeratne_2012a

    Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis

    Conrad_x_Sloan.qtl.Wang_Wijeratne_2012b

    Dissection of two soybean QTL conferring partial resistance to Phytophthora sojae through sequence and gene expression analysis

    Cook_x_N87-2122-4.qtl.Li_Wilson_2002

    Molecular Mapping Genes Conditioning Reduced Palmitic Acid Content in N87-2122-4 Soybean

    DongNong1068_x_DongNong8004.qtl.Zhao_Wang_2008

    Identification of QTL underlying the resistance of soybean to pod borer, Leguminivora glycinivorella (Mats.) obraztsov, and correlations with plant, pod and seed traits

    DongNong46_x_KenJian23.qtl.Mao_Jiang_2013

    Identification of quantitative trait loci underlying seed protein and oil contents of soybean across multi-genetic backgrounds and environments

    Douglas_x_Pyramid.qtl.Njiti_Meksem_2002

    Common loci underlie field resistance to soybean sudden death syndrome in Forrest, Pyramid, Essex, and Douglas

    DunbarPI552538_x_GsojaPI326582A.qtl.Manavalan_Prince_2015

    Identification of Novel QTL Governing Root Architectural Traits in an Interspecific Soybean Population

    Elgin_x_PI436684.qtl.Kim_Diers_2012a

    Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations

    Elgin_x_PI436684.qtl.Kim_Diers_2012b

    Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations

    Embrapa20_x_BRS133.qtl.Nicolás_Hungria_2005

    Identification of quantitative trait loci controlling nodulation and shoot mass in progenies from two Brazilian soybean cultivars

    Essex_x_Forrest.qtl.Brensha_Kantartzi_2017

    Genetic Analysis of Root and Shoot Traits in the 'Essex' by 'Forrest' Recombinant Inbred Line (RIL) Population of Soybean [Glycine max (L.) Merr.]

    Essex_x_Forrest.qtl.Chang_Doubler_1996

    Two Additional Loci underlying Durable Field Resistance to Soybean Sudden Death Syndrome (SDS)

    Essex_x_Forrest.qtl.Chang_Doubler_1997

    Association of Loci Underlying Field Resistance to Soybean Sudden Death Syndrome (SDS) and Cyst Nematode (SCN) Race 3

    Essex_x_Forrest.qtl.Cho_Njiti_2002

    Quantitative Trait Loci Associated with Foliar Trigonelline Accumulation inGlycine MaxL

    Essex_x_Forrest.qtl.Hnetkovsky_Chang_1996

    Genetic Mapping of Loci underlying Field Resistance to Soybean Sudden Death Syndrome (SDS)

    Essex_x_Forrest.qtl.Iqbal_Meksem_2001

    Microsatellite markers identify three additional quantitative trait loci for resistance to soybean sudden-death syndrome (SDS) in Essex × Forrest RILs

    Essex_x_Forrest.qtl.Josie_Alcivar_2007

    Research Article: Genomic regions containing QTL for plant height, internodes length, and flower color in soybean [Glycine max (L.) Merr]

    Essex_x_Forrest.qtl.Kassem_Meksem_2004a

    Definition of Soybean Genomic Regions That Control Seed Phytoestrogen Amounts

    Essex_x_Forrest.qtl.Kassem_Meksem_2004b

    Loci underlying resistance to manganese toxicity mapped in a soybean recombinant inbred line population of `Essex' x `Forrest'

    Essex_x_Forrest.qtl.Meksem_Doubler_1999

    Clustering among loci underlying soybean resistance to Fusarium solani, SDS and SCN in near-isogenic lines

    Essex_x_Forrest.qtl.Meksem_Pantazopoulos_2001

    ’Forrest’ resistance to the soybean cyst nematode is bigenic: saturation mapping of the Rhg1and Rhg4 loci

    Essex_x_Forrest.qtl.Sharma_Sharma_2011

    The genetic control of tolerance to aluminum toxicity in the ‘Essex’ by ‘Forrest’ recombinant inbred line population

    Essex_x_Forrest.qtl.Yesudas_Sharma_2010

    Identification of QTL in soybean underlying resistance to herbivory by Japanese beetles (Popillia japonica, Newman).

    Essex_x_Forrest.qtl.Yuan_Njiti_2002

    Quantitative trait loci in Two Soybean Recombinant Inbred Line Populations Segregating for Yield and Disease Resistance

    Essex_x_PI437654.qtl.Gutierrez-Gonzalez_Wu_2009

    Genetic control of soybean seed isoflavone content: importance of statistical model and epistasis in complex traits

    Essex_x_PI437654.qtl.Gutierrez-Gonzalez_Wu_2010

    Intricate environment-modulated genetic networks control isoflavone accumulation in soybean seeds

    Essex_x_Williams.qtl.Hyten_Pantalone_2004a

    Molecular mapping and identification of soybean fatty acid modifier quantitative trait loci

    Essex_x_Williams.qtl.Hyten_Pantalone_2004b

    Seed quality QTL in a prominent soybean population

    Evans_x_PI88788.qtl.Concibido_Young_1996

    Targeted comparative genome analysis and qualitative mapping of a major partial-resistance gene to the soybean cyst nematode

    Evans_x_Peking.qtl.Concibido_Lange_1997

    Genome Mapping of Soybean Cyst Nematode Resistance Genes in ‘Peking’, PI 90763, and PI 88788 Using DNA Markers

    FiskbeyIII_x_Williams82.qtl.Do_Vuong_2018

    Mapping and confirmation of loci for salt tolerance in a novel soybean germplasm, Fiskeby III

    FiskebyIII_x_Mandarin.qtl.Burton_Burkey_2016

    Phenotypic variation and identification of quantitative trait loci for ozone tolerance in a Fiskeby III × Mandarin (Ottawa) soybean population

    FiskebyIII_x_Mandarin.qtl.Hacisalihoglu_Burton_2018

    Quantitative trait loci associated with soybean seed weight and composition under different phosphorus levels

    Flyer_x_Hartwig.qtl.Kazi_Shultz_2008

    Separate loci underlie resistance to root infection and leaf scorch during soybean sudden death syndrome

    Flyer_x_Hartwig.qtl.Prabhu_Njiti_1999

    Selecting Soybean Cultivars for Dual Resistance to Soybean Cyst Nematode and Sudden Death Syndrome Using Two DNA Markers

    Fukuyutaka_x_Himeshirazu.qtl.Oki_Komatsu_2012

    Genetic analysis of antixenosis resistance to the common cutworm (Spodoptera litura Fabricius) and its relationship with pubescence characteristics in soybean (Glycine max (L.) Merr.).

    GD2422_x_LD01-5907.qtl.Tan_Serven_2018

    QTL mapping and epistatic interaction analysis of field resistance to sudden death syndrome (Fusarium virguliforme) in soybean

    Glycinemaxvariety7499_x_GlycinesojaPI245331.qtl.Li_Pfeiffer_2008

    Soybean QTL for Yield and Yield Components Associated with Glycine soja Alleles

    Hamilton_x_PI90763.qtl.Guo_Sleper_2005

    Identification of QTLs associated with resistance to soybean cyst nematode races 2, 3 and 5 in soybean PI 90763.

    Hamilton_x_PI90763.qtl.Guo_Sleper_2006

    Identification of QTLs associated with resistance to soybean cyst nematode races 2, 3 and 5 in soybean PI 90763

    Harosoy_x_Fukuyutaka.qtl.Benitez_Hajika_2010

    A Major QTL Controlling Seed Cadmium Accumulation in Soybean

    Hartwig_x_Flyer.qtl.Kazi_Shultz_2010

    Iso-lines and inbred-lines confirmed loci that underlie resistance from cultivar ‘Hartwig’ to three soybean cyst nematode populations

    Hartwig_x_Williams82.qtl.Vierling_Faghihi_1996

    Association of RFLP markers with loci conferring broad-based resistance to the soybean cyst nematode (Heterodera glycines)

    Hartwig_x_Y23.qtl.Ferreira_Cervigni_2011

    QTLs for resistance to soybean cyst nematode, races 3, 9, and 14 in cultivar Hartwig

    Hayahikari_x_Toyomusume.qtl.Funatsuki_Ishimoto_2006

    Simple sequence repeat markers linked to a major QTL controlling pod shattering in soybean

    HeFeng25_x_DongnongL-5.qtl.Xie_Han_2012

    SSR- and SNP-related QTL underlying linolenic acid and other fatty acid contents in soybean seeds across multiple environments

    Hefeng25_x_Conrad.qtl.Han_Li_2012

    QTL analysis of soybean seed weight across multi-genetic backgrounds and environments

    Hefeng25_x_MapleArrow.qtl.Li_Sun_2010

    Identification of QTL underlying soluble pigment content in soybean stems related to resistance to soybean white mold (Sclerotinia sclerotiorum)

    Hefeng25_x_OACBayfield.qtl.Li_Wang_2016

    Mapping quantitative trait loci (QTLs) underlying seed vitamin E content in soybean with main, epistatic and QTL × environment effects

    Hefeng45_x_Dongnong48.qtl.yang_Ding_2017

    Identification of QTL underlying soybean agglutinin content in soybean seeds and analysis for epistatic effects among multiple genetic backgrounds and environments

    Huachun_x_Wayao.qtl.Cai_Cheng_2018

    Fine-mapping of QTLs for individual and total isoflavone content in soybean (Glycine max L.) using a high-density genetic map

    Hwangkeum_x_IT182932.qtl.Yang_Moon_2011

    Novel major quantitative trait loci regulating the content of isoflavone in soybean seeds

    IA2008_x_PI468916.qtl.Wang_Graef_2004a

    Identification of putative QTL that underlie yield in interspecific soybean backcross populations

    IA2008_x_PI468916.qtl.Wang_Graef_2004b

    Identification of putative QTL that underlie yield in interspecific soybean backcross populations

    Ippon-Sangoh_x_Fukuyutaka.qtl.Komatsu_Hwang_2012

    Identification of QTL controlling post-flowering period in soybean

    Iyodaizu_x_Tachinagaha.qtl.Van_Takahashi_2017

    Mapping quantitative trait loci for root development under hypoxia conditions in soybean (Glycine max L. Merr.).

    JP036034_x_Ryuhou.qtl.Wang_Chen_2015

    Identification of Quantitative Trait Loci for Oil Content in Soybean Seed

    JP110755_x_Fukuyutaka.qtl.Kuroda_Kaga_2013

    QTL affecting fitness of hybrids between wild and cultivated soybeans in experimental fields

    JWS156-1_x_Jackson.qtl.Tuyen_Lal_2010

    Identification of a major QTL allele from wild soybean (Glycine soja Sieb. & Zucc.) for increasing alkaline salt tolerance in soybean

    Jackson_x_JWS156-1.qtl.Hamwieh_Xu_2008

    Conserved salt tolerance quantitative trait locus (QTL) in wild and cultivated soybeans

    Jidou12_x_JiNF58.qtl.Shi_Yan_2018

    Identification of a major quantitative trait locus underlying salt tolerance in ‘Jidou 12’ soybean cultivar

    Jidou9_x_ZYD2738.qtl.Yan_Li_2014

    Identification and validation of an over-dominant QTL controlling soybean weight using populations derived from Glycine max x Glycine soja

    Jindou23_x_Huibuzhi.qtl.LIANG_YU_2010

    QTL Mapping of Isoflavone, Oil and Protein Contents in Soybean (Glycine max L. Merr.)

    JindouNo6PI574484_x_197PI471938.qtl.Hamwieh_Tuyen_2011

    Identification and validation of a major QTL for salt tolerance in soybean

    Jingdou23_x_ZDD2315.qtl.Liang_Yu_2014

    Inheritance and QTL mapping of related root traits in soybean at the seedling stage

    Jinpumkong2_x_SS2-2.qtl.Liu_Kim_2011

    QTL identification of yield-related traits and their association with flowering and maturity in soybean

    Jinpumkong_x_SS2-2.qtl.Liu_Kim_2011

    QTL identification of flowering time at three different latitudes reveals homeologous genomic regions that control flowering in soybean

    Jiyu50_x_Jinong18.qtl.Yao_Liu_2015

    Analysis of quantitative trait loci for main plant traits in soybean.

    Jiyu69_x_SS0404-T5-76.qtl.Shim_Kim_2017

    Identification of QTLs for branching in soybean (Glycine max (L.) Merrill)

    KF1_x_NN1138-2.qtl.Li_Zhao_2011

    Genetic structure composed of additive QTL, epistatic QTL pairs and collective unmapped minor QTL conferring oil content and fatty acid components of soybeans

    KFNo1_x_NN1138-2.qtl.Korir_Qi_2011

    A study on relative importance of additive, epistasis and unmapped QTL for Aluminium tolerance at seedling stage in soybean

    KS4303sp_x_PI407818B.qtl.Orazaly_Chen_2015

    Identification and Confirmation of Quantitative Trait Loci Associated with Soybean Seed Hardness

    KS4895_x_Jackson.qtl.Charlson_Bhatnagar_2009

    Polygenic inheritance of canopy wilting in soybean [Glycine max (L.) Merr.]

    KS4895_x_Jackson.qtl.Hwang_Ray_2014

    Genetics and mapping of quantitative traits for nodule number, weight, and size in soybean (Glycine max L.[Merr.])

    Kaori_x_ChiangMai60.qtl.Juwattanasomran_Somta_2011

    A SNP in GmBADH2 gene associates with fragrance in vegetable soybean variety “Kaori” and SNAP marker development for the fragrance

    Karafuto-1_x_Toyosuzu.qtl.Khan_Githiri_2008

    QTL analysis of cleistogamy in soybean

    Keburi_x_Mosshokutou.qtl.Choi_Mano_2010

    Identification of QTLs controlling somatic embryogenesis using RI population of cultivar × weedy soybean

    Kefeng1_x_Nannon1138-2.qtl.Du_Wang_2009

    Mapping QTLs for seed yield and drought susceptibility index in soybean (Glycine max L.) across different environments

    Kefeng1_x_Nannong1138-2.qtl.DU_YU_2009

    Analysis of QTLs for the Trichome Density on the Upper and Downer Surface of Leaf Blade in Soybean [Glycine max (L.) Merr.]

    KefengNo1_x_1138-2.qtl.Gai_Wang_2007

    A comparative study on segregation analysis and QTL mapping of quantitative traits in plants—with a case in soybean

    KefengNo1_x_Nannong.qtl.Li_Wang_2005

    QTL mapping of phosphorus deficiency tolerance in soybean (Glycine max L. Merr.)

    KefengNo1_x_Nannong1138-2.qtl.Ma_Kan_2016

    Quantitative Trait Loci (QTL) Mapping for Glycinin and β-Conglycinin Contents in Soybean (Glycine max L. Merr.)

    KefengNo1_x_Nannong1138-2.qtl.Yan_Wang_2015

    Detection and fine‐mapping of SC7 resistance genes via linkage and association analysis in soybean

    KefengNo1_x_Nannong1138-2.qtl.Yang_Zhao_2011

    Mapping QTLs for tissue culture response in soybean (Glycine max (L.) Merr.)

    KefengNo1_x_Nannong1138-2.qtl.Yin_Meng_2010

    Mapping quantitative trait loci associated with chlorophyll a fluorescence parameters in soybean (Glycine max (L.) Merr.).

    KefengNo1_x_Nannong1138-2.qtl.Zhang_Wang_2004

    QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers

    Kenjian4_x_Fengshou24.qtl.Hu_Zhang_2013

    Determination of the genetic architecture of seed size and shape via linkage and association analysis in soybean (Glycine max L. Merr.)

    Kenjian4_x_Fengshou24.qtl.Wu_Xu_2012

    Mapping QTLs for Phosphorus-deficiency Tolerance in Soybean at Seedling Stage

    Kenwood_x_LG94-1713.qtl.Guzman_Diers_2007

    QTL Associated with Yield in Three Backcross-Derived Populations of Soybean

    Keunol_x_Iksan10.qtl.Lee_Kim_2016

    Positional mapping and identification of novel quantitative trait locus responsible for UV-B radiation tolerance in soybean [Glycine max (L.) Merr.]

    Keunolkong_x_Iksan10.qtl.Kim_Kim_2010

    Analysis of Quantitative Trait Loci (QTLs) for Seed Size and Fatty Acid Composition Using Recombinant Inbred Lines in Soybean

    Keunolkong_x_Iksan10.qtl.Shim_Ha_2015

    Detection of quantitative trait loci controlling UV-B resistance in soybean

    Keunolkong_x_Shinpaldalkong.qtl.Kim_Kang_2005

    Analysis of quantitative trait loci associated with leaflet types in two recombinant inbred lines of soybean

    Keunolkong_x_Shinpaldalkong.qtl.Kim_Kang_2006

    Mapping of putative quantitative trait loci controlling the total oligosaccharide and sucrose content of Glycine max seeds

    Keunolkong_x_Sinpaldalkong.qtl.Ha_Kim_2012

    Mapping QTLs with epistatic effects and QTL-by-environment interactions for seed coat cracking in soybeans

    Keunolkong_x_Sinpaldalkong.qtl.Kang_Kwak_2009

    Population-specific QTLs and their different epistatic interactions for pod dehiscence in soybean [Glycine max (L.) Merr.]

    Kitakomachi_x_Koganejiro.qtl.Githiri_Yang_2007

    QTL Analysis of Low Temperature Induced Browning in Soybean Seed Coats

    Kottman_x_PI391589B.qtl.Guo_Wang_2008

    Genetic Mapping of QTLs Underlying Partial Resistance to in Soybean PI 391589A and PI 391589B

    L-10_x_Heinong37.qtl.Chang_Dong_2011

    QTL underlying resistance to two HG types of Heterodera glycines found in soybean cultivar 'L-10'

    LD00-2817P_x_LDX01-1-65.qtl.Valdés-López_Thibivilliers_2011

    Identification of Quantitative Trait Loci Controlling Gene Expression during the Innate Immunity Response of Soybean    

    Lineage69_x_Tucunare.qtl.Leite_Pinheiro_2016

    QTL mapping of soybean oil content for marker-assisted selection in plant breeding program

    Lishuizhongzihuangdou_x_Nannong493-1.qtl.LI_LI_2010

    QTL Analysis for Dynamic Expression of Chlorophyll Content in Soybean (Glycine max L. Merr.)

    Luheidou2_x_Nanhuizao.qtl.Fan_Li_2015

    Analysis of additive and epistatic quantitative trait loci underlying fatty acid concentrations in soybean seeds across multiple environments

    M82806_x_HHP.qtl.Brummer_Graef_1997

    Mapping QTL for Seed Protein and Oil Content in Eight Soybean Populations

    M91-212006_x_SZG9652.qtl.Vollmann_Schausberger_2002

    The presence or absence of the soybean Kunitz trypsin inhibitor as a quantitative trait locus for seed protein content

    MD96-5722_x_Spencer.qtl.Akond_Liu_2014

    Identification of Quantitative Trait Loci (QTL) Underlying Protein, Oil, and Five Major Fatty Acids’ Contents in Soybean

    MD96-5722_x_Spencer.qtl.Anderson_Akond_2015

    Quantitative trait loci underlying resistance to sudden death syndrome (SDS) in MD96-5722 by ‘Spencer’ recombinant inbred line population of soybean

    MFS-553_x_PI243545.qtl.Zeng_Chen_2014

    Identification of Quantitative Trait Loci for Sucrose Content in Soybean Seed

    MN1606SP_x_Spencer.qtl.Luckew_Swaminathan_2017

    ‘MN1606SP’ by ‘Spencer’ filial soybean population reveals novel quantitative trait loci and interactions among loci conditioning SDS resistance

    MaBelle_x_Proto.qtl.Csanádi_Vollmann_2001

    Seed quality QTLs identified in a molecular map of early maturing soybean

    Magellan_x_PI404198A.qtl.Guo_Sleper_2006

    Quantitative Trait Loci underlying Resistance to Three Soybean Cyst Nematode Populations in Soybean PI 404198A

    Magellan_x_PI437654.qtl.Gutierrez-Gonzalez_Vuong_2011

    Major locus and other novel additive and epistatic loci involved in modulation of isoflavone concentration in soybean seeds

    Magellan_x_PI438489B.qtl.Vuong_Sleper_2011

    Confirmation of quantitative trait loci for resistance to multiple-HG types of soybean cyst nematode (Heterodera glycines Ichinohe)

    Magellan_x_PI567516C.qtl.Vuong_Sleper_2010

    Novel quantitative trait loci for broad-based resistance to soybean cyst nematode (Heterodera glycines Ichinohe) in soybean PI 567516C

    MapleDonovan_x_OACBayfield.qtl.Huynh_Bastien_2010

    Identification of QTLs Associated with Partial Resistance to White Mold in Soybean Using Field-Based Inoculation

    Merit_x_PI194639.qtl.Vuong_Diers_2008

    Identification of QTL for Resistance to Sclerotinia Stem Rot in Soybean Plant Introduction 194639

    Minsoy_x_Archer.qtl.Orf_Chase_1999a

    Genetics of Soybean Agronomic Traits: I. Comparison of Three Related Recombinant Inbred Populations

    Minsoy_x_Archer.qtl.Orf_Chase_1999b

    Genetics of Soybean Agronomic Traits: II. Interactions between Yield Quantitative Trait Loci in Soybean

    Minsoy_x_Archer.qtl.Stombaugh_Orf_2004

    Quantitative Trait Loci Associated with Cell Wall Polysaccharides in Soybean Seed

    Minsoy_x_Noir1.qtl.Njiti_Lightfoot_2006

    Genetic analysis infers Dt loci underlie resistance to Fusarium solani f. sp. glycines in indeterminate soybeans

    Minsoy_x_Noir1.qtl.Specht_Chase_2001

    Soybean Response to Water: A QTL Analysis of Drought Tolerance

    Minsoy_x_Noir1.qtl.Terry_Chase_2000

    Soybean Quantitative Trait Loci for Resistance to Insects

    Minsoy_x_Noir1.qtl.Tischner_Allphin_2003

    Genetics of Seed Abortion and Reproductive Traits in Soybean

    Misuzudaizu_x_MoshidouGong503.qtl.Tajuddin_Watanabe_2003

    Analysis of Quantitative Trait Loci for Protein and Lipid Contents in Soybean Seeds Using Recombinant Inbred Lines

    Misuzudaizu_x_MoshidouGong503.qtl.Yamanaka_2001

    An Informative Linkage Map of Soybean Reveals QTLs for Flowering Time, Leaflet Morphology and Regions of Segregation Distortion

    Misuzudaizu_x_MoshidouGong503.qtl.Yamanaka_Nagamura_2000

    Quantitative Trait Locus Analysis of Flowering Time in Soybean Using a RFLP Linkage Map.

    Misuzudaizu_x_MoshidouGong503MG503.qtl.Githiri_Watanabe_2006

    QTL analysis of flooding tolerance in soybean at an early vegetative growth stage

    Msoy8001_x_Conquista.qtl.Silva_Schuster_2007

    Validation of microsatellite markers for assisted selection of soybean resistance to cyst nematode races 3 and 14

    N87-984-16_x_TN93-99.qtl.Panthee_Kwanyuen_2004

    Quantitative trait loci for β-conglycinin (7S) and glycinin (11S) fractions of soybean storage protein

    N87-984-16_x_TN93-99.qtl.Panthee_Pantalone_2004

    Genomic regions governing soybean seed nitrogen accumulation

    N87-984-16_x_TN93-99.qtl.Panthee_Pantalone_2005

    Quantitative Trait Loci for Seed Protein and Oil Concentration, and Seed Size in Soybean

    N87-984-16_x_TN93-99.qtl.Panthee_Pantalone_2006a

    Quantitative trait loci controlling sulfur containing amino acids, methionine and cysteine, in soybean seeds

    N87-984-16_x_TN93-99.qtl.Panthee_Pantalone_2006b

    Genomic Regions Associated with Amino Acid Composition in Soybean

    N87-984-16_x_TN93-99.qtl.Panthee_Pantalone_2006c

    Modifier QTL for fatty acid composition in soybean oil

    N87-984-16_x_TN93-99.qtl.Panthee_Pantalone_2007

    Quantitative trait loci for agronomic traits in soybean

    N97-3363-3_x_PI423893.qtl.Bachlava_Dewey_2009

    Mapping and Comparison of Quantitative Trait Loci for Oleic Acid Seed Content in Two Segregating Soybean Populations

    N97-3708-13_x_Anand.qtl.Spencer_Landau-Ellis_2004

    Molecular markers associated with linolenic acid content in soybean

    Nannong94-156_x_Bogao.qtl.Zhang_Cheng_2009

    Detection of quantitative trait loci for phosphorus deficiency tolerance at soybean seedling stage

    Nannong94-156_x_Bogao.qtl.Zhang_Cheng_2010

    Identification of genomic regions determining flower and pod numbers development in soybean (Glycine max L.)

    Nannong94-156_x_Bogao.qtl.Zhang_Li_2016

    High-Density Genetic Mapping Identifies New Major Loci for Tolerance to Low-Phosphorus Stress in Soybean

    Nasushirome_x_Enrei.qtl.Oyoo_Benitez_2010

    QTL Analysis of Seed Coat Cracking in Soybean

    No9-I_x_Harosoy-e3.qtl.Liu_Abe_2010

    QTL Mapping for Photoperiod Insensitivity of a Japanese Soybean Landrace Sakamotowase

    Noir1_x_Archer.qtl.Reyna_Sneller_2001

    Evaluation of Marker‐Assisted Introgression of Yield QTL Alleles into Adapted Soybean

    Noir1_x_Minsoy.qtl.Mansur_Orf_1996

    Genetic Mapping of Agronomic Traits Using Recombinant Inbred Lines of Soybean

    Noir1_x_Minsoy.qtl.Salas_Oyarzo-Llaipen_2006

    Genetic mapping of seed shape in three populations of recombinant inbred lines of soybean (Glycine max L. Merr.)

    OACBayfield_x_Hefeng25.qtl.Li_Liu_2010

    Identification of QTL underlying vitamin E contents in soybean seed among multiple environments

    OACBayfield_x_OACShire.qtl.Shaw_Rajcan_2017

    Molecular mapping of soybean seed tocopherols in the cross AC Bayfield X OAC Shire

    OACMillennium_x_Heinong38.qtl.Palomeque_Li-Jun_2009a

    QTL in mega-environments: I. Universal and specific seed yield QTL detected in a population derived from a cross of high-yielding adapted × high-yielding exotic soybean lines

    OACMillennium_x_Heinong38.qtl.Palomeque_Li-Jun_2009b

    QTL in mega-environments: II. Agronomic trait QTL co-localized with seed yield QTL detected in a population derived from a cross of high-yielding adapted × high-yielding exotic soybean lines

    OACWallace_x_OACGlencoe.qtl.Eskandari_Cober_2013a

    Genetic control of soybean seed oil: I. QTL and genes associated with seed oil concentration in RIL populations derived from crossing moderately high-oil parents

    OACWallace_x_OACGlencoe.qtl.Eskandari_Cober_2013b

    Genetic control of soybean seed oil: II. QTL and genes that increase oil concentration without decreasing protein or with increased seed yield

    OX20-8_x_PI398841.qtl.Lee_Mian_2013

    Novel quantitative trait loci for partial resistance to Phytophthora sojae in soybean PI 398841

    Ohsuzu_x_PI595926.qtl.Kato_Sayama_2014

    A major and stable QTL associated with seed weight in soybean across multiple environments and genetic backgrounds

    Osage_x_RA-452.qtl.Zeng_Lara_2017

    Quantitative Trait Loci for Chloride Tolerance in ‘Osage’ Soybean

    P9254_x_A97-770012.qtl.Charlson_Bailey_2005

    Molecular Marker Satt481 is Associated with Iron‐Deficiency Chlorosis Resistance in a Soybean Breeding Population

    PI200538_x_CNS.qtl.Tamulonis_Luzzi_1997

    DNA marker analysis of loci conferring resistance to peanut root-knot nematode in soybean

    PI27890_x_PI290136.qtl.Lark_Chase_1995

    Interactions between quantitative trait loci in soybean in which trait variation at one locus is conditional upon a specific allele at another.

    PI27890_x_PI290136.qtl.Lark_Orf_1994

    Epistatic expression of quantitative trait loci (QTL) in soybean [Glycine max (L.) Merr.] determined by QTL association with RFLP alleles

    PI27890_x_PI290136.qtl.Mansur_Lark_1993

    Interval mapping of quantitative trait loci for reproductive, morphological, and seed traits of soybean (Glycine max L.).

    PI27890_x_PI290136.qtl.Mansur_Orf_1993

    Determining the linkage of quantitative trait loci to RFLP markers using extreme phenotypes of recombinant inbreds of soybean (Glycine max L. Merr.)

    PI417479_x_Williams82.qtl.Berger_Minor_1999

    An RFLP Marker Associated with Resistance to Phomopsis Seed Decay in Soybean PI 417479

    PI437654_x_BSR101.qtl.Webb_Baltazar_1995

    Genetic mapping of soybean cyst nematode race-3 resistance loci in the soybean PI 437.654

    PI437654_x_Bell.qtl.Brucker_Carlson_2005

    Rhg1 alleles from soybean PI 437654 and PI 88788 respond differentially to isolates of Heterodera glycines in the greenhouse

    PI437654_x_Essex.qtl.Wu_Blake_2009

    QTL, additive and epistatic effects for SCN resistance in PI 437654

    PI438489B_x_Hamilton.qtl.Masum-Akond_Ragin_2012

    Quantitative Trait Loci Associated with Moisture, Protein, and Oil Content in Soybean [Glycine max (L.) Merr.]

    PI438489B_x_Hamilton.qtl.My-Abdelmajid_Ramos_2017a

    Quantitative Trait Loci (QTL) that Underlie SCN Resistance in Soybean [Glycine max (L.) Merr.] PI438489B by 'Hamilton' Recombinant Inbred Line (RIL) Population

    PI438489B_x_Hamilton.qtl.My-Abdelmajid_Ramos_2017b

    The 'PI 438489B' by 'Hamilton' SNP-based genetic linkage map of soybean [Glycine max (L.) Merr.] identified quantitative trait loci that underlie seedling SDS resistance

    PI438489B_x_Hamilton.qtl.Yue_Arelli_2001

    Molecular characterization of resistance to Heterodera glycines in soybean PI 438489B

    PI442031_x_Sterling.qtl.Zhao_Ablett_2005

    Inheritance and Genetic Mapping of Resistance to Rhizoctonia Root and Hypocotyl Rot in Soybean

    PI468916_x_A81-356022.qtl.Kabelka_Carlson_2005

    Localization of Two Loci that Confer Resistance to Soybean Cyst Nematode from Glycine soja PI 468916

    PI468916_x_A81-356022.qtl.Nichols_Glover_2006

    Fine Mapping of a Seed Protein QTL on Soybean Linkage Group I and Its Correlated Effects on Agronomic Traits

    PI468916_x_A81356022.qtl.Wang_Diers_2001

    Loci underlying resistance to Race 3 of soybean cyst nematode in Glycine soja plant introduction 468916

    PI483463_x_Hutcheson.qtl.Asekova_Kulkarni_2016

    Novel Quantitative Trait Loci for Forage Quality Traits in a Cross between PI 483463 and ‘Hutcheson’ in Soybean

    PI483463_x_Hutcheson.qtl.Ha_Kim_2014

    Identification of quantitative trait loci controlling linolenic acid concentration in PI483463 (Glycine soja)

    PI483463_x_Hutcheson.qtl.Ha_Vuong_2013

    Genetic mapping of quantitative trait loci conditioning salt tolerance in wild soybean (Glycine soja) PI 483463

    PI507531_x_Spencer.qtl.Brzostowski_Pruski_2017

    Impact of seed protein alleles from three soybean sources on seed composition and agronomic traits

    PI567296B_x_Century84.qtl.Patzoldt_Carlson_2005

    Characterization of Resistance to Brown Stem Rot of Soybean in Five Accessions from Central China

    PI567541B_x_Skylla.qtl.Zhang_Gu_2009

    Molecular mapping of soybean aphid resistance genes in PI 567541B

    PI595645_x_PI416937.qtl.Harris_Abdel-Haleem_2015

    Soybean Quantitative Trait Loci Conditioning Soybean Rust-Induced Canopy Damage

    PI68658_x_Lawrence.qtl.Fox_Cary_2015

    Confirmation of a Seed Yield QTL in Soybean

    PI88287_x_PI89008.qtl.Vaghchhipawala_Bassüner_2001

    Modulations in Gene Expression and Mapping of Genes Associated with Cyst Nematode Infection of Soybean

    PI89772_x_Hamilton.qtl.Yue_Sleper_2001

    Mapping Resistance to Multiple Races ofHeterodera glycinesin Soybean PI 89772

    PI96354_x_Bossier.qtl.Li_Jakkula_2001

    SSR mapping and confirmation of the QTL from PI96354 conditioning soybean resistance to southern root-knot nematode

    PI97100_x_Coker237.qtl.Lee_Bailey_1996

    Identification of quantitative trait loci for plant height, lodging, and maturity in a soybean population segregating for growth habit

    PI97100_x_Coker237.qtl.Mian_Bailey_1996

    Molecular markers associated with seed weight in two soybean populations

    PI97100_x_Coker237.qtl.Mian_Shipe_1997

    RFLP Analysis of Chlorimuron Ethyl Sensitivity in Soybean

    Parker_x_Gsoja.qtl.Sebolt_Shoemaker_2000

    Analysis of a Quantitative Trait Locus Allele from Wild Soybean That Increases Seed Protein Concentration in Soybean

    Peking_x_Essex.qtl.Mahalmgam_Skorupska_1995

    DNA Markers for Resistance to Heterodera glycines I. Race 3 in Soybean Cultivar Peking.

    Peking_x_Essex.qtl.Qiu_Arelli_1999

    RFLP markers associated with soybean cyst nematode resistance and seed composition in a ‘Peking’בEssex’ population

    Peking_x_Keburi.qtl.Song_Han_2010

    Identification of QTL underlying somatic embryogenesis capacity of immature embryos in soybean (Glycine max (L.) Merr.)

    Peking_x_Tamahomare.qtl.Sayama_Nakazaki_2009

    QTL analysis of seed-flooding tolerance in soybean (Glycine max [L.] Merr.)

    Peking_x_Tamahomare.qtl.Yoshikawa_Okumoto_2010

    Transgressive segregation of isoflavone contents under the control of four QTLs in a cross between distantly related soybean varieties

    Pioneer9071_x_8902.qtl.Rossi_Orf_2013

    Genetic basis of soybean adaptation to North American vs. Asian mega-environments in two independent populations from Canadian × Chinese crosses

    Pioneer9071_x_Line8902.qtl.Palomeque_Liu_2010

    Validation of mega-environment universal and specific QTL associated with seed yield and agronomic traits in soybeans

    Pureunkong_x_Jinpumkong2.qtl.Lee_Park_2001

    Genetic mapping of QTLs conditioning soybean sprout yield and quality

    RG10_x_OX948.qtl.Reinprecht_Poysa_2006

    Seed and agronomic QTL in low linolenic acid, lipoxygenase-free soybean (Glycine max(L.) Merrill) germplasm

    RIL6013_x_RIL3613.qtl.Ning_Yuan_2018

    Identification of QTLs related to the vertical distribution and seed-set of pod number in soybean [Glycine max (L.) Merri]

    Ripley_x_Spencer.qtl.de-Farias-Neto_Hashmi_2007

    Mapping and confirmation of a new sudden death syndrome resistance QTL on linkage group D2 from the soybean genotypes PI 567374 and ‘Ripley’

    S-100_x_Tokyo.qtl.Lee_Boerma_2004

    A major QTL conditioning salt tolerance in S-100 soybean and descendent cultivars

    S08-80_x_PI464925B.qtl.Winter_Shelp_2007

    QTL associated with horizontal resistance to soybean cyst nematode in Glycine soja PI464925B

    S100_x_Tokyo.qtl.Mian_Ashley_1998

    QTLs conditioning early growth in a soybean population segregating for growth habit

    S19-90_x_Williams82.qtl.Arahana_Graef_2001

    Identification of QTLs for Resistance toSclerotinia sclerotiorumin Soybean

    S19-90_x_Williams82.qtl.Kim_Diers_2000

    Inheritance of Partial Resistance to Sclerotinia Stem Rot in Soybean

    S99-2281_x_PI408105A.qtl.Nguyen_Vuong_2012

    Mapping of Quantitative Trait Loci Associated with Resistance toPhytophthora sojaeand Flooding Tolerance in Soybean

    SD02-4-59_x_A02-381100.qtl.Wang_Jiang_2012

    Quantitative trait locus analysis of saturated fatty acids in a population of recombinant inbred lines of soybean

    SD02-4-59_x_A02-381100.qtl.Wang_Jiang_2014

    Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred line populations of soybean.

    SD02-4-59_x_A02-381100.qtl.Wang_Jiang_2015

    Quantitative trait locus analysis of seed sulfur-containing amino acids in two recombinant inbred line populations of soybean

    SS-516_x_Camp.qtl.Zhang_Chen_2008

    Quantitative Trait Loci Mapping of Seed Hardness in Soybean

    SS-516_x_Camp.qtl.Zhang_Chen_2009

    Putative Quantitative Trait Loci Associated with Calcium Content in Soybean Seed

    Skylla_x_E00290.qtl.Kandel_Chen_2018

    Soybean Resistance to White Mold: Evaluation of Soybean Germplasm Under Different Conditions and Validation of QTL

    Sowon_x_V94-5152.qtl.Jeong_Moon_2011

    Fine genetic mapping of the genomic region controlling leaflet shape and number of seeds per pod in the soybean

    Su88-M21S_x_XinyixiaoheidouX.qtl.Wu_Zhou_2011

    Identification of quantitative trait loci for partial resistance to Phytophthora sojae in soybean

    TK780_x_Hidaka4.qtl.Shibata_Takayama_2008

    Genetic relationship between lipid content and linolenic acid concentration in soybean seeds

    Taekwangkong_x_SS2-2.qtl.Sun_Kim_2013a

    QTLs for resistance to Phomopsis seed decay are associated with days to maturity in soybean (Glycine max)

    Taekwangkong_x_SS2-2.qtl.Sun_Kim_2013b

    QTLs for resistance to Phomopsis seed decay are associated with days to maturity in soybean (Glycine max)

    Tokei758_x_To-8E.qtl.Sayama_Hwang_2010

    Mapping and comparison of quantitative trait loci for soybean branching phenotype in two locations

    Toyoharuka_x_Toyomusume.qtl.Ohnishi_Funatsuki_2011

    Variation of GmIRCHS (Glycine max inverted-repeat CHS pseudogene) is related to tolerance of low temperature-induced seed coat discoloration in yellow soybean

    Toyomusume_x_Harosoy.qtl.Yamada_Funatsuki_2009

    A major QTL, qPDH1, is commonly involved in shattering resistance of soybean cultivars

    Toyomusume_x_Hayahikan.qtl.Funatsuki_Kawaguchi_2005

    Mapping of QTL associated with chilling tolerance during reproductive growth in soybean

    Toyomusume_x_Tsurukogane.qtl.Ferdous_Watanabe_2006

    QTL Analysis of Resistance to Soybean Cyst Nematode Race 3 in Soybean Cultivar Toyomusume

    Uzuramame_x_L67-3469.qtl.Oyoo_Githiri_2010

    QTL analysis of net-like cracking in soybean seed coats

    V71-370_x_PI407162.qtl.Maughan_Maroof_1996

    Molecular-marker analysis of seed-weight: genomic locations, gene action, and evidence for orthologous evolution among three legume species

    V71-370_x_PI407162.qtl.Tucker_Saghai-Maroof_2010

    Mapping Quantitative Trait Loci for Partial Resistance toPhytophthora sojaein a Soybean Interspecific Cross

    W05_x_C08.qtl.Qi_Li_2014

    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing

    Wan82-178_x_TSBPHDJ.qtl.Xing_Zhou_2012

    Genetic components and major QTL confer resistance to bean pyralid (Lamprosema indicata Fabricius) under multiple environments in four RIL populations of soybean

    Wilis_x_Toyokomachi.qtl.Uchibori_Sasaki_2009

    QTL analysis for resistance to Soybean dwarf virus in Indonesian soybean cultivar Wilis

    Williams82_x_PI366121.qtl.Dhungana_Kulkarni_2017

    Mapping quantitative trait loci controlling soybean seed starch content in an interspecific cross of ‘Williams 82’ (Glycine max ) and ‘PI 366121’ (Glycine soja )

    Williams82_x_PI366121.qtl.Kulkarni_Asekova_2017

    Mapping QTLs for 100-seed weight in an interspecific soybean cross of Williams 82 (Glycine max) and PI 366121 (Glycine soja)

    Williams82_x_PI366121.qtl.Lee_Yoo_2015

    Detection of novel QTLs for foxglove aphid resistance in soybean

    Williams82_x_PI437655.qtl.Jiao_Vuong_2015

    Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655.

    Wyandot_x_PI567301B.qtl.Lee_Jun_2015

    SNP markers linked to QTL conditioning plant height, lodging, and maturity in soybean

    Wyandot_x_PI567324.qtl.Jun_Rouf-Mian_2013

    Genetic mapping of three quantitative trait loci for soybean aphid resistance in PI 567324

    X3145-B-B-3-15_x_ACBrant.qtl.Pandurangan_Pajak_2012

    Relationship between asparagine metabolism and protein concentration in soybean seed

    Xiaoheidou_x_GR8836.qtl.Wang_Cheng_2015

    Genetic analysis and quantitative trait locus identification of the reproductive to vegetative growth period ratio in soybean (Glycine max (L.) Merr.)

    XuyongHongdouXu_x_Baohexuan3.qtl.Cheng_Wang_2011

    Genetic analysis and QTL detection of reproductive period and post-flowering photoperiod responses in soybean

    Y23_x_Hartwig.qtl.Arriagada_Mora_2012

    Bayesian mapping of quantitative trait loci (QTL) controlling soybean cyst nematode resistant

    Young_x_PI229358.qtl.Bianchi-Hall_Carter_2000

    Aluminum Tolerance Associated with Quantitative Trait Loci Derived from Soybean PI 416937 in Hydroponics

    Young_x_PI416937.qtl.Bailey_Mian_1997

    Pod Dehiscence of Soybean: Identification of Quantitative Trait Loci

    Young_x_PI416937.qtl.Fasoula_Harris_2003

    Identification, Mapping, and Confirmation of a Soybean Gene for Bud Blight Resistance

    Young_x_PI416937.qtl.Fasoula_Harris_2004

    Validation and Designation of Quantitative Trait Loci for Seed Protein, Seed Oil, and Seed Weight from Two Soybean Populations

    Young_x_PI416937.qtl.Lee_Bailey_1996a

    RFLP loci associated with soybean seed protein and oil content across populations and locations

    Young_x_PI416937.qtl.Lee_Bailey_1996b

    Molecular Markers Associated with Soybean Plant Height, Lodging, and Maturity across Locations

    Young_x_PI416937.qtl.Mian_Ashley_1998a

    An Additional QTL for Water Use Efficiency in Soybean

    Young_x_PI416937.qtl.Mian_Ashley_1998b

    An Additional QTL for Water Use Efficiency in Soybean

    Young_x_PI416937.qtl.Mian_Bailey_1996

    Molecular Markers Associated with Water Use Efficiency and Leaf Ash in Soybean

    ZDD09454_x_Yudou12.qtl.Lu_Wen_2013

    Identification of the quantitative trait loci (QTL) underlying water soluble protein content in soybean

    ZhongDou27_x_JiuNong20.qtl.Wang_Han_2015

    Mapping Isoflavone QTL with Main, Epistatic and QTL × Environment Effects in Recombinant Inbred Lines of Soybean

    Zhongdou27_x_Jiunong20.qtl.Han_Teng_2015

    Unconditional and conditional QTL underlying the genetic interrelationships between soybean seed isoflavone, and protein or oil contents

    Zhongdou27_x_Jiunong20.qtl.Meng_Han_2011

    QTL underlying the resistance to soybean aphid (Aphis glycines Matsumura) through isoflavone-mediated antibiosis in soybean cultivar ‘Zhongdou 27’

    Zhongdou27_x_Jiunong20.qtl.Zeng_Li_2009

    Identification of QTL underlying isoflavone contents in soybean seeds among multiple environments

    Zhongdou32_x_Zhongdou29.qtl.Chen_Shan_2011

    Quantitative trait loci analysis of stem strength and related traits in soybean

    mixed.qtl.Glover_Wang_2004

    Near Isogenic Lines Confirm a Soybean Cyst Nematode Resistance Gene from PI 88788 on Linkage Group J

    mixed.qtl.Hwang_King_2016

    Meta-analysis to refine map position and reduce confidence intervals for delayed-canopy-wilting QTLs in soybean

    mixed.qtl.Jun_Van_2008

    Association analysis using SSR markers to find QTL for seed protein content in soybean

    mixed.qtl.Matthews_MacDonald_1998

    Molecular markers residing close to the Rhg4 locus conferring resistance to soybean cyst nematode race 3 on linkage group A of soybean

    mixed.qtl.Meksem_Ruben_2001

    Conversion of AFLP bands into high-throughput DNA markers

    mixed.qtl.Mudge_Cregan_1997

    Two Microsatellite Markers That Flank the Major Soybean Cyst Nematode Resistance Locus

    mixed.qtl.Pathan_Vuong_2013

    Genetic Mapping and Confirmation of Quantitative Trait Loci for Seed Protein and Oil Contents and Seed Weight in Soybean

    mixed.qtl.Qi_Wu_2011

    Soybean oil content QTL mapping and integrating with meta-analysis method for mining genes

    mixed.qtl.Ramamurthy_Jedlicka_2014

    Identification of new QTLs for seed mineral, cysteine, and methionine concentrations in soybean

  • repeats
    repeats

    Wm82.rpt.C1JW

    Genomic repetitive elements for Glycine max, identified in Williams 82 (Wm82) assembly 1, published as part of SoyTEdb

  • sequence_feature
    sequence_feature

    Wm82.gnm2.trnsc.Wang_Duan_2024

    Transcription initiation-site information for Glycine max accession Williams 82 genome assembly 2

    Wm82.gnm4.atlas_ctACRs.Zhang_Schmitz_2024

    Cell-type-specific ACRs(ctACRs) identified each cell type, for Glycine max accession Williams 82 genome assembly 4

    Wm82.gnm4.atlas_ctACRs_motifs.Zhang_Schmitz_2024

    The motifs identified in the accessible chromatin regions (ACRs), as bed files with motif signatures per feature, for Glycine max accession Williams 82 genome assembly 4

    Wm82.gnm4.atlas_scatac.Zhang_Schmitz_2024

    Sequence profiles of chromatin accessibility, from scATAC-seq, for many cell types, tissues, and developmental stages, for Glycine max accession Williams 82 genome assembly 4

    Wm82.gnm4.atlas_snrna.Zhang_Schmitz_2024

    snRNA-seq (single‐nucleus RNA sequencing), as bigwig files, for cell clusters from scATAC-seq, for Glycine max accession Williams 82 genome assembly 4

    Wm82.gnm4.trnsc.Wang_Duan_2024

    Transcription initiation-site information for Glycine max accession Williams 82 genome assembly 2

  • supplements
    supplements

    mixed.esm.Phansak_Soonsuwon_2016

    Electronic supplementary data from Phansak et al. 2016, Multiple-Population selectice genotyping to identify (Glycine max (L.) Merr.) seed protein and oil QTLs. G3 6(6):1635 (2016).

  • synteny
    synteny

    Wm82.gnm2.syn.HXNY

    Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.

  ---

  • Glycine soja
    soja

    • annotations
      annotations

      F_IGA1003.gnm1.ann1.G61B

      Genome annotation files for cultivar F

      PI483463.gnm1.ann1.3Q3Q

      Glycine soja accession PI483463 genome annotation files; JGI name Glycine soja v1.1

      PI_549046.gnm1.ann1.65KD

      Gene annotations for Glycine soja accession PI_549046 (SoyW02)

      PI_562565.gnm1.ann1.1JD2

      Gene annotations for Glycine soja accession PI_562565 (SoyW01)

      PI_578357.gnm1.ann1.0ZKP

      Gene annotations for Glycine soja accession PI_578357 (SoyW03)

      W05.gnm1.ann1.T47J

      Glycine soja accession W05 genome annotation files

    • gene_functions
      gene_functions

    • genomes
      genomes

      F_IGA1003.gnm1.V9RB

      Genome assembly files for Glycine soja F (F_IGA1003 in publication; WHFS_GsojaF_1.0 in the GenBank assembly record)

      PI483463.gnm1.YJWS

      Glycine soja accession PI 483463 genome assembly, v1.0; JGI name Glycine soja v1.1

      PI_549046.gnm1.TSLF

      Genome assembly for Glycine soja accession PI_549046 (SoyW02)

      PI_562565.gnm1.Z2VG

      Genome assembly for Glycine soja accession PI_562565 (SoyW01)

      PI_578357.gnm1.1XT1

      Genome assembly for Glycine soja accession PI_578357 (SoyW03)

      W05.gnm1.SVL1

      Genome assembly files for cultivar W05 from Xie, Lam et al. (2019): A reference-grade wild soybean genome

    • gwas
      gwas

      mixed.gwas.Hu_Zhang_2014

      GWAS of soybean yield-related traits, conducted on 113 wild soybean accessions, genotyped with 85 simple sequence repeat (SSR) markers.

      mixed.gwas.Zhang_Song_2017

      GWAS of Soybean Cyst Nematode (SCN) resistance in 1032 accessions of Glycine soja, using the SoySNP50K marker set relative to the Wm82.gnm1 assembly

    ---

    • Glycine cyrtoloba
      cyrtoloba

      • annotations
        annotations

        G1267.gnm1.ann1.HRFD

        Genome annotation files for Glycine cyrtoloba, accession G1267

      • genomes
        genomes

        G1267.gnm1.YWW6

        Genome assemblies for Glycine cyrtoloba, accession G1267

      ---

      • Glycine dolichocarpa
        dolichocarpa

        • annotations
          annotations

          G1134.gnm1.ann1.4BJM

          Genome annotation files for Glycine dolichocarpa, accession G1134

        • genomes
          genomes

          G1134.gnm1.PP7B

          Genome assemblies for Glycine dolichocarpa, accession G1134

        ---

        • Glycine falcata
          falcata

          • annotations
            annotations

            G1718.gnm1.ann1.2KSV

            Genome annotation files for Glycine falcata, accession G1718

          • genomes
            genomes

            G1718.gnm1.B1PY

            Genome assemblies for Glycine falcata, accession G1718

          ---

          • Glycine stenophita
            stenophita

            • annotations
              annotations

              G1974.gnm1.ann1.F257

              Genome annotation files for Glycine stenphyta, accession G1974

            • genomes
              genomes

              G1974.gnm1.7MZB

              Genome assemblies for Glycine stenophita, accession G1974

            ---

            • Glycine syndetika
              syndetika

              • annotations
                annotations

                G1300.gnm1.ann1.RRK6

                Genome annotation files for Glycine syndetika, accession G1300

              • genomes
                genomes

                G1300.gnm1.C11H

                Genome assemblies for Glycine syndetika, accession G1300

              ---

              • Glycine D3-tomentella
                D3-tomentella

                • annotations
                  annotations

                  G1403.gnm1.ann1.XNZQ

                  Genome annotation files for Glycine D3 tomentella, accession G1403

                • genomes
                  genomes

                  G1403.gnm1.CL6K

                  Genome assemblies for Glycine D3 tomentella, accession G1403

                ---