GO term enrichment analysis tool
Northern Uniform Soybean Trials (NUST)Phenotypic reports for the Northern Uniform Soybean Trials (NUST) from 1989 to present
Browser interface to all of the files in SoyBase.
GlycineMineGlycineMine: an InterMine interface for most of the data at SoyBase, including genetic data. Tools include a powerful query engine.
Data Overviews for soy genomic dataOverviews of data characteristics at SoyBase and LIS: genome assembly sizes, gene counts, BUSCO coverage, etc.
USDA Germplasm SoySNP50KUSDA Germplasm collection SoySNP50K Haplotypes: downloads, viewing on browsers, etc.
Legacy SoyBase tool: Search for the GRIN descriptor data
Gene Expression ExplorerLegacy SoyBase tool: Gene expression resources for soybean
Find corresponding gene IDs between accessions
Gene Search ToolSearch for genes
Trait Search ToolSearch for trait associations
SoyCycSearch for genes, proteins, metabolites or pathways
Run BLASTs against LIS genomes, CDSes, and proteins
Annotate Your SequencesFunctionally annotate protein or nucleotide sequences and place them into gene trees
Genome browsers for soybean and related species. (Also accessible from the GENOMICS tab)
Genome Context Viewer for GlycineBrowser for dynamically discovering and viewing genomic synteny across selected species.
ZZBrowse GWAS/QTLInteractive visualization of multiple GWAS and QTL data sets, using synteny to identify potentially conserved association regions between species.
CMap-js: Genetic Map ViewerView genetic and comparative maps.
LIS Germplasm GIS ViewerView GIS location information for soybean accessions.
Expression ResourcesGene expression resources for soybean.
GCViT: SNP Comparison ToolA multiple chromosome visualisation tool for visualizing resequencing or SNP array data
OntologySoyBase Soybean growth, development and structural ontology.
ParentageSoybean parentage and pedigrees