The Soybean Transposable Elements database, SoyTEdb, described in SoyTEdb: a comprehensive database of transposable elements in the soybean genome (Du, Grant et al., 2010), contains transposable elements identified in the Williams 82 genome assembly 1, including 32,552 retrotransposons (Class I) and 6,029 DNA transposons (Class II). Linked files provide the named and classified sequences, as well as a reduced set clustered at 60% identity and represented by centroid sequences from each cluster.
Publications:
Citation: Du J, Grant D, Tian Z, Nelson RT, Zhu L, Shoemaker RC, Ma J. SoyTEdb: a comprehensive database of transposable elements in the soybean genome. BMC Genomics. 2010 Feb 17;11:113. doi: 10.1186/1471-2164-11-113. PMID: 20163715; PMCID: PMC2830986.