Genome browsers

Genome browsers can be accessed from the GENOMICS tab, with browsers listed under each accession -- or directly from the links below; legacy GBrowse first, then JBrowse.

• JBrowse instances for Glycine max accessions

  Reference - Williams 82

  Wm82.gnm6

  Glycine max accession Williams 82 (ISU01) genome assembly v6; renamed from Wm82 ISU-01 v2.1; JGI name Wm82.a6.v1

  Wm82.gnm5

  Glycine max accession Williams 82 (Wm82), genome assembly 5 doi.org/10.1002/tpg2.20382

  Wm82.gnm4

  Glycine max accession Williams 82 genome assembly v4.0; JGI name Wm82.a4.v1 doi.org/10.1111/tpj.14500

  Wm82.gnm2

  Glycine max accession Williams 82 genome assembly v2.0; JGI name Wm82.a2.v1 doi.org/10.1038/nature08670

  Wm82.gnm1

  Glycine max accession Williams genome assembly v1.0; JGI name Glycine max v1.1 doi.org/10.1038/nature08670

  Reference - Lee

  Lee.gnm3

  Glycine max accession Lee, genome assembly 3 doi.org/10.1002/tpg2.20382

  Lee.gnm2

  Glycine max genotype Lee genome assembly v2.0 doi.org/10.1016/j.jare.2021.10.009

  Lee.gnm1

  Glycine max accession Lee Genome assembly 1; JGI name Lee v1.1 doi.org/10.1111/tpj.14500

  Reference - Fiskeby III

  FiskebyIII.gnm1

  Glycine max genotype Fiskeby III genome assembly 1; JGI name Fiskeby v1.1

  Reference - Zhonghuang 13

  Zh13.gnm2

  Genome assembly version 2 files for cultivar Zhonghuang 13, Shen et al. (2019) doi.org/10.1007/s11427-019-9822-2

  Zh13.gnm1

  Genome assembly files for cultivar Zhonghuang 13, Shen et al. (2018) doi.org/10.1007/s11427-018-9360-0

  Reference - Hwangkeum

  Hwangkeum.gnm1

  Glycine max genotype Hwangkeum genome assembly v1.0 doi.org/10.1093/g3journal/jkab272

  Reference - Jidou 17

  JD17.gnm1

  Glycine max accession Jidou 17 (JD17), genome assembly 1 doi.org/10.1093/g3journal/jkac017

  Chu, Peng et al., 2021

  Citation (DOI) for this accession group: doi.org/10.1038/s41597-021-00947-2

  Hefeng25_IGA1002.gnm1

  Genome assembly files for cultivar Hefeng 25 (Hefeng25_IGA1002 in publication; WHFS_GmHF25_1.0 in the GenBank assembly record)

  Huaxia3_IGA1007.gnm1

  Genome assembly files for cultivar Huaxia3 (Huaxia3_IGA1007 in publication; WHFS_GmHX3_1.0 in the GenBank assembly record)

  Jinyuan_IGA1006.gnm1

  Genome assembly files for cultivar Jinyuan (Jinyuan_IGA100 in the publication; 6HFS_GmJY_1.0 in the GenBank assembly record)

  Wenfeng7_IGA1001.gnm1

  Genome assembly files for cultivar Wenfeng 7 (Wenfeng7_IGA1001 in publication; WHFS_GmWF7_1.0 in the GenBank assembly record); Chu et al. (2021)

  Wm82_IGA1008.gnm1

  Genome assembly files for cultivar Williams 82 (Wm82_IGA1008 in publication; WHFS_GmW82_1.0 in the GenBank assembly record)

  Zh13_IGA1005.gnm1

  Genome assembly files for cultivar Zhonghuang 13 (Zh13_IGA1005 in publication; WHFS_GmZH13_1.0 in the GenBank assembly record)

  Zh35_IGA1004.gnm1

  Genome assembly files for cultivar Zhonghuang 35 (Zh35_IGA1004 in publication; WHFS_GmZH35_1.0 in the GenBank assembly record)

  Liu, Du et al., 2020

  Citation (DOI) for this accession group: doi.org/10.1016/j.cell.2020.05.023

  58-161.gnm1

  Genome assembly for Glycine max accession 58-161 (SoyL04)

  Amsoy.gnm1

  Genome assembly for Glycine max accession Amsoy (SoyC05)

  DongNongNo_50.gnm1

  Genome assembly for Glycine max accession DongNongNo_50 (SoyC12)

  FengDiHuang.gnm1

  Genome assembly for Glycine max accession FengDiHuang (SoyL07)

  HanDouNo_5.gnm1

  Genome assembly for Glycine max accession HanDouNo_5 (SoyC09)

  HeiHeNo_43.gnm1

  Genome assembly for Glycine max accession HeiHeNo_43 (SoyC13)

  JiDouNo_17.gnm1

  Genome assembly for Glycine max accession JiDouNo_17 (SoyC11)

  JinDouNo_23.gnm1

  Genome assembly for Glycine max accession JinDouNo_23 (SoyC07)

  JuXuanNo_23.gnm1

  Genome assembly for Glycine max accession JuXuanNo_23 (SoyC03)

  KeShanNo_1.gnm1

  Genome assembly for Glycine max accession KeShanNo_1 (SoyC14)

  PI_398296.gnm1

  Genome assembly for Glycine max accession PI_398296 (SoyL05)

  PI_548362.gnm1

  Genome assembly for Glycine max accession PI_548362 (SoyC10)

  QiHuangNo_34.gnm1

  Genome assembly for Glycine max accession QiHuangNo_34 (SoyC08)

  ShiShengChangYe.gnm1

  Genome assembly for Glycine max accession ShiShengChangYe (SoyL09)

  TieFengNo_18.gnm1

  Genome assembly for Glycine max accession TieFengNo_18 (SoyC02)

  TieJiaSiLiHuang.gnm1

  Genome assembly for Glycine max accession TieJiaSiLiHuang (SoyL08)

  TongShanTianEDan.gnm1

  Genome assembly for Glycine max accession TongShanTianEDan (SoyL03)

  WanDouNo_28.gnm1

  Genome assembly for Glycine max accession WanDouNo_28 (SoyC04)

  XuDouNo_1.gnm1

  Genome assembly for Glycine max accession XuDouNo_1 (SoyC01)

  YuDouNo_22.gnm1

  Genome assembly for Glycine max accession YuDouNo_22 (SoyC06)

  ZhangChunManCangJin.gnm1

  Genome assembly for Glycine max accession ZhangChunManCangJin (SoyL06)

  Zhutwinning2.gnm1

  Genome assembly for Glycine max accession Zhutwinning2 (SoyL01)

  ZiHuaNo_4.gnm1

  Genome assembly for Glycine max accession ZiHuaNo_4 (SoyL02)

  Wm82_NJAU.gnm1

  Glycine max accession Williams 82 from Nanjing Agricultural University (Wm82-NJAU), genome assebly v1 doi.org/10.1016/j.molp.2023.08.012

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  • JBrowse instances for Glycine soja accessions

    Valliyodan, Cannon et al., 2019

    Citation (DOI) for this accession group: doi.org/10.1111/tpj.14500

    PI483463.gnm1

    Glycine soja accession PI 483463 genome assembly, v1.0; JGI name Glycine soja v1.1

    Xie, Chung et al., 2019

    Citation (DOI) for this accession group: doi.org/10.1038/s41467-019-09142-9

    W05.gnm1

    Genome assembly files for cultivar W05 from Xie, Lam et al. (2019): A reference-grade wild soybean genome

    Chu, Peng et al., 2021

    Citation (DOI) for this accession group: doi.org/10.1038/s41597-021-00947-2

    F_IGA1003.gnm1

    Genome assembly files for Glycine soja F (F_IGA1003 in publication; WHFS_GsojaF_1.0 in the GenBank assembly record)

    Liu, Du et al., 2020

    Citation (DOI) for this accession group: doi.org/10.1016/j.cell.2020.05.023

    PI_549046.gnm1

    Genome assembly for Glycine soja accession PI_549046 (SoyW02)

    PI_562565.gnm1

    Genome assembly for Glycine soja accession PI_562565 (SoyW01)

    PI_578357.gnm1

    Genome assembly for Glycine soja accession PI_578357 (SoyW03)

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    • JBrowse instances for Glycine cyrtoloba accessions

      Zhuang, Wang et al., 2022

      Citation (DOI) for this accession group: doi.org/10.1038/s41477-022-01102-4

      G1267.gnm1

      Genome assemblies for Glycine cyrtoloba, accession G1267

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      • JBrowse instances for Glycine dolichocarpa accessions

        Zhuang, Wang et al., 2022

        Citation (DOI) for this accession group: doi.org/10.1038/s41477-022-01102-4

        G1134.gnm1

        Genome assemblies for Glycine dolichocarpa, accession G1134

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        • JBrowse instances for Glycine falcata accessions

          Zhuang, Wang et al., 2022

          Citation (DOI) for this accession group: doi.org/10.1038/s41477-022-01102-4

          G1718.gnm1

          Genome assemblies for Glycine falcata, accession G1718

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          • JBrowse instances for Glycine stenophita accessions

            Zhuang, Wang et al., 2022

            Citation (DOI) for this accession group: doi.org/10.1038/s41477-022-01102-4

            G1974.gnm1

            Genome assemblies for Glycine stenophita, accession G1974

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            • JBrowse instances for Glycine syndetika accessions

              Zhuang, Wang et al., 2022

              Citation (DOI) for this accession group: doi.org/10.1038/s41477-022-01102-4

              G1300.gnm1

              Genome assemblies for Glycine syndetika, accession G1300

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              • JBrowse instances for Glycine D3-tomentella accessions

                Zhuang, Wang et al., 2022

                Citation (DOI) for this accession group: doi.org/10.1038/s41477-022-01102-4

                G1403.gnm1

                Genome assemblies for Glycine D3 tomentella, accession G1403