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GWAS Report for Leaf carotenoid content 1
Experimental Details
Number of germplasm analyzed | 332 |
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Number of loci tested | 31253 |
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Platform name | SoySNP50k |
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Platform details | Illumina iSelect BeadChip |
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Publication for This Experiment
Association Mapping of Total Carotenoids in Diverse Soybean Genotypes Based on Leaf Extracts and High-Throughput Canopy Spectral Reflectance Measurements
(Dhanapal et al. 2015a)
PLoS ONE 2015, 10(9):e0137213
10.1371/journal.pone.0137213
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Associated locus | R2 | p-value | Chromosome | Linkage Group |
Leaf carotenoid content 1-g1.1 | ss715579102 | 4.11 | 0.000457088 | Gm01 | D1a |
Leaf carotenoid content 1-g1.2 | ss715579432 | 4.03 | 0.000524807 | Gm01 | D1a |
Leaf carotenoid content 1-g2 | ss715580774 | 4.3 | 0.000323594 | Gm01 | D1a |
Leaf carotenoid content 1-g3 | ss715583100 | 3.45 | 0.000457088 | Gm02 | D1b |
Leaf carotenoid content 1-g4.1 | ss715588177 | 4.33 | 0.000301995 | Gm04 | C1 |
Leaf carotenoid content 1-g4.2 | ss715588184 | 4.5 | 0.000229087 | Gm04 | C1 |
Leaf carotenoid content 1-g4.3 | ss715588185 | 4.49 | 0.000239883 | Gm04 | C1 |
Leaf carotenoid content 1-g4.4 | ss715588197 | 4.29 | 0.000323594 | Gm04 | C1 |
Leaf carotenoid content 1-g4.5 | ss715588199 | 4.53 | 0.000281838 | Gm04 | C1 |
Leaf carotenoid content 1-g5 | ss715599380 | 3.8 | 0.000416869 | Gm08 | A2 |
Leaf carotenoid content 1-g6 | ss715602081 | 4.05 | 0.000549541 | Gm08 | A2 |
Leaf carotenoid content 1-g7 | ss715607418 | 4.34 | 0.00020893 | Gm10 | O |
Leaf carotenoid content 1-g8 | ss715606823 | 3.84 | 0.000363078 | Gm10 | O |
Leaf carotenoid content 1-g9 | ss715614224 | 4.07 | 0.000512861 | Gm13 | F |
Leaf carotenoid content 1-g10 | ss715614857 | 3.19 | 0.000398107 | Gm13 | F |
Leaf carotenoid content 1-g11 | ss715623062 | 4.06 | 0.000457088 | Gm15 | E |
Leaf carotenoid content 1-g12.1 | ss715622306 | 4.34 | 0.000398107 | Gm15 | E |
Leaf carotenoid content 1-g12.2 | ss715622308 | 4.22 | 0.00040738 | Gm15 | E |
Leaf carotenoid content 1-g12.3 | ss715622316 | 4.33 | 0.000323594 | Gm15 | E |
Leaf carotenoid content 1-g12.4 | ss715622317 | 4.33 | 0.000354813 | Gm15 | E |
Leaf carotenoid content 1-g12.5 | ss715622320 | 4.26 | 0.000363078 | Gm15 | E |
Leaf carotenoid content 1-g13.1 | ss715632891 | 5.01 | 6.92E-05 | Gm18 | G |
Leaf carotenoid content 1-g13.2 | ss715632923 | 5.46 | 3.02E-05 | Gm18 | G |
Leaf carotenoid content 1-g13.3 | ss715632930 | 5.32 | 4.37E-05 | Gm18 | G |
Leaf carotenoid content 1-g13.4 | ss715632940 | 5.26 | 4.37E-05 | Gm18 | G |
Leaf carotenoid content 1-g13.5 | ss715632945 | 3.63 | 0.000467735 | Gm18 | G |
Leaf carotenoid content 1-g13.6 | ss715632952 | 4.11 | 0.000281838 | Gm18 | G |
Leaf carotenoid content 1-g14 | ss715635640 | 3.49 | 0.00047863 | Gm19 | L |
Click Here to View Full List of GWAS QTL