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Click Here to View Full List of GWAS QTL

GWAS Report for SCN 7

Experimental Details

Number of germplasm analyzed	303
Number of loci tested	2265
Platform name	SoySNP6K
Platform details	Illumina Infinium SoySNP6K

Publication for This Experiment

Epistatic interaction between Rhg1a and Rhg2 in PI 90763 confers resistance to virulent soybean cyst nematode populations
(Basnet et al. 2022)

Basnet et al. 2022 Theor. Appl. Genet. 135:2025-2039
10.1007/s00122-022-04091-2

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001335
GO	GO:0009624
TO	TO:0000384

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	LOD	Chromosome	Linkage Group
SCN 7-g1	SCN-pop1-Gm11	ss715629539	27.1	Gm11	B1
SCN 7-g2	SCN-pop1-Gm18	ss715629539	23.5	Gm18	G

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Click Here to View Full List of GWAS QTL