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GWAS Report for Salt tolerance 1
Experimental Details
Number of germplasm analyzed | 191 |
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Number of loci tested | 1536 |
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Platform name | GoldenGate assay |
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Platform details | Illumina GoldenGate assay |
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Publication for This Experiment
Association mapping of soybean seed germination under salt stress
(Kan et al. 2015a)
Mol Genet Genomics 2015, 290:2147
10.1007/s00438-015-1066-y
Controlled vocabulary terms associated with the QTL Family
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | Associated locus | p-value | Chromosome | Linkage Group |
Salt tolerance 1-g1 | imbibition rate | ss107918182 | 173.78 | Gm08 | A2 |
Salt tolerance 1-g2 | imbibition rate | ss715602885 | 134.89 | Gm08 | A2 |
Salt tolerance 1-g3 | imbibition rate | ss107913422 | 138.03 | Gm06 | C2 |
Salt tolerance 1-g4 | germination index | ss107913148 | 117.48 | Gm18 | G |
Salt tolerance 1-g5 | germination rate | ss107917480 | 234.42 | Gm14 | B2 |
Salt tolerance 1-g6 | germination rate | ss107913455 | 1071.51 | Gm02 | D1b |
Salt tolerance 1-g7 | germination rate | ss107913456 | 1071.51 | Gm02 | D1b |
Salt tolerance 1-g8 | germination rate | ss107913160 | 239.88 | Gm02 | D1b |
Salt tolerance 1-g9 | germination rate | ss107920377 | 741.31 | Gm13 | F |
Salt tolerance 1-g10 | germination rate | ss107913490 | 112.20 | Gm12 | H |
Salt tolerance 1-g11 | germination rate | ss107912556 | 3890.45 | Gm09 | K |
Salt tolerance 1-g12 | germination rate | ss107913534 | 831.76 | Gm03 | N |
Salt tolerance 1-g13 | germination rate | ss107912610 | 165.95 | Gm17 | D2 |
Click Here to View Full List of GWAS QTL